(Linear) MAP of: ./Fgr-S_1_A08_T7.seq check: 5189 from: 1 to: 644 Fgr-S_1_A08_T7 0 0 0 1 644 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:32 .. BspMI EagI | BglI NotI | SmaI MscI ClaI BsrBI| | SrfI AlwNI | EarI| ClaI NheI || | | | | || | | TCGAGCGGCCGCCCGGGCAGGTACTGGCCACACATGATGATGTATGGCACTTTTATTTTATAACTCTTCATCGATCAACTAAACGGTGATCGATCTAGCT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AGCTCGCCGGCGGGCCCGTCCATGACCGGTGTGTACTACTACATACCGTGAAAATAAAATATTGAGAAGTAGCTAGTTGATTTGCCACTAGCTAGATCGA a S S G R P G R Y W P H M M M Y G T F I L * L F I D Q L N G D R S S * - b R A A A R A G T G H T * * C M A L L F Y N S S S I N * T V I D L A - c E R P P G Q V L A T H D D V W H F Y F I T L H R S T K R * S I * L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d L P R G P L Y Q G C M I I Y P V K I K Y S K M S * S F P S R D L - e S R G G P C T S A V C S S T H C K * K I V R * R D V L R H D I * S - f R A A A R A P V P W V H H H I A S K N * L E E D I L * V T I S R A - BsgI BglII HgiEII BcgI | DraIII BcgI | | | | | | AGCACATCACAGATCTTAGCAGGCACCACCAGCACAGGTAGCTGTCATGGGGATGCTGTAGATGGCGGGGGCGATGGTGCTGCACGGGGTGGTGGTGCAA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TCGTGTAGTGTCTAGAATCGTCCGTGGTGGTCGTGTCCATCGACAGTACCCCTACGACATCTACCGCCCCCGCTACCACGACGTGCCCCACCACCACGTT a H I T D L S R H H Q H R * L S W G C C R W R G R W C C T G W W C N - b S T S Q I L A G T T S T G S C H G D A V D G G G D G A A R G G G A I - c A H H R S * Q A P P A Q V A V M G M L * M A G A M V L H G V V V Q - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d * C M V S R L L C W W C L Y S D H P H Q L H R P R H H Q V P H H H L - e A C * L D * C A G G A C T A T M P I S Y I A P A I T S C P T T T C - f L V D C I K A P V V L V P L Q * P S A T S P P P S P A A R P P P A - BsgI BspMI SspI | DrdI Eco57I Bpu10I| | | | | || TATTGTGGGATGTTTACGCTGCACATCGACGGAAGGGTCTGAAGCACCATCCCCATTATCTCAACCGGAACCTGCTGCTGAGGCTGCCCGAAACTTTGCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 ATAACACCCTACAAATGCGACGTGTAGCTGCCTTCCCAGACTTCGTGGTAGGGGTAATAGAGTTGGCCTTGGACGACGACTCCGACGGGCTTTGAAACGG a I V G C L R C T S T E G S E A P S P L S Q P E P A A E A A R N F A - b L W D V Y A A H R R K G L K H H P H Y L N R N L L L R L P E T L P - c Y C G M F T L H I D G R V * S T I P I I S T G T C C * G C P K L C P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d I T P H K R Q V D V S P D S A G D G N D * G S G A A S A A R F K A - e Y Q P I N V S C M S P L T Q L V M G M I E V P V Q Q Q P Q G F S Q - f I N H S T * A A C R R F P R F C W G W * R L R F R S S L S G S V K G - Bpu10I Psp1406I BglII | | | CTTGCTGCTGCTGAGGCTGGCCGAAACGTTGCCCTTGCTGCTGCCGCATGATGATCTGTGCCACGCTACAGACCGCCTGGCACCGAGCCTGCTCCGAGAT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GAACGACGACGACTCCGACCGGCTTTGCAACGGGAACGACGACGGCGTACTACTAGACACGGTGCGATGTCTGGCGGACCGTGGCTCGGACGAGGCTCTA a L A A A E A G R N V A L A A A A * * S V P R Y R P P G T E P A P R S - b L L L L R L A E T L P L L L P H D D L C H A T D R L A P S L L R D - c C C C * G W P K R C P C C C R M M I C A T L Q T A W H R A C S E I - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R A A A S A P R F T A R A A A A H H D T G R * L G G P V S G A G L - e G Q Q Q Q P Q G F R Q G Q Q Q R M I I Q A V S C V A Q C R A Q E S I - f K S S S L S A S V N G K S S G C S S R H W A V S R R A G L R S R S - NdeI AlwNI BsgI | PflMI BspGI | | PstI | | | | | CTGGGCCAGCGGCTGGCAGCACTGTTGCCGCATCAACTGGCAACCGCTTGCCTGCCACATCTGTGACTGGACATATGCTGTCTGGCTGCACTGCTGCAGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GACCCGGTCGCCGACCGTCGTGACAACGGCGTAGTTGACCGTTGGCGAACGGACGGTGTAGACACTGACCTGTATACGACAGACCGACGTGACGACGTCC a G P A A G S T V A A S T G N R L P A T S V T G H M L S G C T A A G - b L G Q R L A A L L P H Q L A T A C L P H L * L D I C C L A A L L Q E - c W A S G W Q H C C R I N W Q P L A C H I C D W T Y A V W L H C C R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d D P G A A P L V T A A D V P L R K G A V D T V P C I S D P Q V A A P - e Q A L P Q C C Q Q R M L Q C G S A Q W M Q S Q V Y A T Q S C Q Q L - f R P W R S A A S N G C * S A V A Q R G C R H S S M H Q R A A S S C - BsrDI BsrGI | | AAAGCAGCGCATGTGTTCATCTGCGGCTGTGGCTGCGGTTGCGGCTGCGGCTGCGGCTGCTGCTGGCATTGCCCGTAGCCCTGGCTACAGGTAGTGTACA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TTTCGTCGCGTACACAAGTAGACGCCGACACCGACGCCAACGCCGACGCCGACGCCGACGACGACCGTAACGGGCATCGGGACCGATGTCCATCACATGT a K Q R M C S S A A V A A V A A A A A A A A G I A R S P G Y R * C T - b S S A C V H L R L W L R L R L R L R L L L A L P V A L A T G S V Q - c K A A H V F I C G C G C G C G C G C G C C W H C P * P W L Q V V Y S - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d F C R M H E D A A T A A T A A A A A A A A P M A R L G P * L Y H V - e F A A C T N M Q P Q P Q P Q P Q P Q P Q Q Q C Q G Y G Q S C T T Y - f S L L A H T * R R S H S R N R S R S R S S S A N G T A R A V P L T C - FspI PvuII |Eco47III EagI | | | | GCTGCGCAACAGCGCTTGTCGCCGACCTCGGCCGCGACCACGCX 601 ---------+---------+---------+---------+---- 644 CGACGCGTTGTCGCGAACAGCGGCTGGAGCCGGCGCTGGTGCGX a A A Q Q R L S P T S A A T T - b L R N S A C R R P R P R P R - c C A T A L V A D L G R D H A - 601 ---------+---------+---------+---------+---- 644 d A A C C R K D G V E A A V V ? - e L Q A V A S T A S R P R S W A - f S R L L A Q R R G R G R G R - Enzymes that do cut: AlwNI BcgI BglI BglII Bpu10I BsgI BspGI BspMI BsrBI BsrDI BsrGI ClaI DraIII DrdI EagI EarI Eco47III Eco57I FspI HgiEII MscI NdeI NheI NotI PflMI Psp1406I PstI PvuII SmaI SrfI SspI Enzymes that do not cut: AatII AceIII AflII AhdI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BclI BfiI BplI BpmI Bpu1102I BsaI BsaBI BsaXI BsbI BseRI BsiWI BsmI BsmBI BspEI BspLU11I BssHII BssSI Bst1107I BstEII BstXI Bsu36I DraI DrdII EciI EcoNI EcoRI EcoRV FseI HindIII HpaI KpnI MfeI MluI NarI NcoI NgoAIV NruI NsiI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI PvuI RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SpeI SphI Sse8387I Sse8647I StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI