(Linear) MAP of: ./Fgr-S_1_C01_T7.seq check: 3038 from: 1 to: 404 Fgr-S_1_C01_T7 0 0 0 1 404 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:32 .. EagI PinAI DraI | | | GCGTGGTCGCGGCCGAGGTACTATAAAAACCTCTATTATGAAGATAGAAACCAACCTGGCTCACACCGGTCTTAACTCAAATCATGTAAGAATTTAAAGG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGCACCAGCGCCGGCTCCATGATATTTTTGGAGATAATACTTCTATCTTTGGTTGGACCGAGTGTGGCCAGAATTGAGTTTAGTACATTCTTAAATTTCC a A W S R P R Y Y K N L Y Y E D R N Q P G S H R S * L K S C K N L K V - b R G R G R G T I K T S I M K I E T N L A H T G L N S N H V R I * R - c V V A A E V L * K P L L * R * K P T W L T P V L T Q I M * E F K G - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d H D R G L Y * L F R * * S S L F W G P E C R D * S L D H L F K F - e T T A A S T S Y F G R N H L Y F G V Q S V G T K V * I M Y S N L P - f R P R P R P V I F V E I I F I S V L R A * V P R L E F * T L I * L - TCGAACAGACCTATAATCTAATTTTCTTCTATTAGATGTTTTCTTAATTCAACATCGAGGTAGCATTTAATCTTCTTGATTTGATCTCTAAAAAATTTTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AGCTTGTCTGGATATTAGATTAAAAGAAGATAATCTACAAAAGAATTAAGTTGTAGCTCCATCGTAAATTAGAAGAACTAAACTAGAGATTTTTTAAAAA a E Q T Y N L I F F Y * M F S * F N I E V A F N L L D L I S K K F L - b S N R P I I * F S S I R C F L N S T S R * H L I F L I * S L K N F C - c R T D L * S N F L L L D V F L I Q H R G S I * S S * F D L * K I F - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d T S C V * L R I K K * * I N E * N L M S T A N L R R S K I E L F N K - e R V S R Y D L K R R N S T K K I * C R P L M * D E Q N S R * F I K - f D F L G I I * N E E I L H K R L E V D L Y C K I K K I Q D R F F K - Bsu36I BfiI | | GCTCTGTTATCCCTAAGGTAACTTTTTTTTCTTAAAAGGTTTATTATTCTTTTAATAGTAATTTTAATAAAAAATTTTTATTTTTTTACTTCCCCAGTAA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGAGACAATAGGGATTCCATTGAAAAAAAAGAATTTTCCAAATAATAAGAAAATTATCATTAAAATTATTTTTTAAAAATAAAAAAATGAAGGGGTCATT a L C Y P * G N F F F L K G L L F F * * * F * * K I F I F L L P Q * - b S V I P K V T F F S * K V Y Y S F N S N F N K K F L F F Y F P S K - c A L L S L R * L F F L K R F I I L L I V I L I K N F Y F F T S P V K - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S Q * G * P L K K K K F P K N N K * Y Y N * Y F I K I K K S G W Y - e A R N D R L Y S K K R L L N I I R K I T I K I F F K * K K V E G T - f Q E T I G L T V K K E * F T * * E K L L L K L L F N K N K * K G L L - EagI NotI BglI| BspMI|| SmaI ||| DraI SrfI |||BsrBI | | ||| | AATTTTTACCTTTTAATTTTTAAATTTATAATTAAGTTCTATAGGGTCTTATCGTCTTTCATAATTATTTTAGCCTTTTAACACCTGCCCGGGCGGCCGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTAAAAATGGAAAATTAAAAATTTAAATATTAATTCAAGATATCCCAGAATAGCAGAAAGTATTAATAAAATCGGAAAATTGTGGACGGGCCCGCCGGCG a N F Y L L I F K F I I K F Y R V L S S F I I I L A F * H L P G R P L - b I F T F * F L N L * L S S I G S Y R L S * L F * P F N T C P G G R - c F L P F N F * I Y N * V L * G L I V F H N Y F S L L T P A R A A A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d F K * R K I K L N I I L N * L T K D D K M I I K A K * C R G P R G - e F N K G K L K * I * L * T R Y P R I T K * L * K L R K V G A R A A A - f I K V K * N K F K Y N L E I P D * R R E Y N N * G K L V Q G P P R - TCGA 401 ---- 404 AGCT a - b S - c R - 401 ---- 404 d S S - e R - f E - Enzymes that do cut: BfiI BglI BspMI BsrBI Bsu36I DraI EagI NotI PinAI SmaI SrfI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BcgI BclI BglII BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrDI BsrGI BssHII BssSI Bst1107I BstEII BstXI ClaI DraIII DrdI DrdII EarI EciI Eco47III Eco57I EcoNI EcoRI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SpeI SphI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI