(Linear) MAP of: ./Fgr-S_4_H06_T7.seq check: 7984 from: 1 to: 635 Fgr-S_4_H06_T7 0 0 0 1 635 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:32 .. EagI Bce83I | | GCGTGGTCGCGGCCGAGGTACACAATGAAAGATGGGAAGGTGTCCCTTTCATTCTTAAAGCTGGTAAAGCATTGAACTCAAGAAAAGCAGAAATTCGTGT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGCACCAGCGCCGGCTCCATGTGTTACTTTCTACCCTTCCACAGGGAAAGTAAGAATTTCGACCATTTCGTAACTTGAGTTCTTTTCGTCTTTAAGCACA a A W S R P R Y T M K D G K V S L S F L K L V K H * T Q E K Q K F V C - b R G R G R G T Q * K M G R C P F H S * S W * S I E L K K S R N S C - c V V A A E V H N E R W E G V P F I L K A G K A L N S R K A E I R V - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d H D R G L Y V I F S P F T D R E N K F S T F C Q V * S F C F N T - e T T A A S T C L S L H S P T G K M R L A P L A N F E L F A S I R T - f R P R P R P V C H F I P L H G K * E * L Q Y L M S S L F L L F E H - BsgI DraI BpmI BsrGI | | | | GCAGTTCAAGGATGTTCCCGGTGACATTTTTAAATGTAAGAAGCAAGGGAAGAAATGAGTTTGTCATACGCCTCCAGCCATCAGAAGCCATGTACATGAA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGTCAAGTTCCTACAAGGGCCACTGTAAAAATTTACATTCTTCGTTCCCTTCTTTACTCAAACAGTATGCGGAGGTCGGTAGTCTTCGGTACATGTACTT a S S R M F P V T F L N V R S K G R N E F V I R L Q P S E A M Y M K - b A V Q G C S R * H F * M * E A R E E M S L S Y A S S H Q K P C T * N - c Q F K D V P G D I F K C K K Q G K K * V C H T P P A I R S H V H E - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d H L E L I N G T V N K F T L L L P L F S N T M R R W G D S A M Y M F - e C N L S T G P S M K L H L F C P F F H T Q * V G G A M L L W T C S - f A T * P H E R H C K * I Y S A L S S I L K D Y A E L W * F G H V H - NdeI | ACTAACTGTGAAGAAACCTGGATTGGAAATGGCTACTGAACAGAGTGAACTTGATCTGTCATATGGGATGCGTTACCAAGATGTCAAAATTCCAGAGGCA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TGATTGACACTTCTTTGGACCTAACCTTTACCGATGACTTGTCTCACTTGAACTAGACAGTATACCCTACGCAATGGTTCTACAGTTTTAAGGTCTCCGT a L T V K K P G L E M A T E Q S E L D L S Y G M R Y Q D V K I P E A - b * L * R N L D W K W L L N R V N L I C H M G C V T K M S K F Q R H - c T N C E E T W I G N G Y * T E * T * S V I W D A L P R C Q N S R G I - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S V T F F G P N S I A V S C L S S S R D Y P I R * W S T L I G S A - e V L Q S S V Q I P F P * Q V S H V Q D T M H S A N G L H * F E L P - f F * S H L F R S Q F H S S F L T F K I Q * I P H T V L I D F N W L C - AceIII DraIII| BseRI || Eco57I BsaI BsbI | || BglII | | | | || | | TACGAACGCCTCATTTTGGATACAATAAGAGGAGACCAGCAACACTTTGTGCGCCGAGATGAGCTGAAGGCTGCCTGGCAGATCTTCACTCCCTTGTTGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 ATGCTTGCGGAGTAAAACCTATGTTATTCTCCTCTGGTCGTTGTGAAACACGCGGCTCTACTCGACTTCCGACGGACCGTCTAGAAGTGAGGGAACAACG a Y E R L I L D T I R G D Q Q H F V R R D E L K A A W Q I F T P L L H - b T N A S F W I Q * E E T S N T L C A E M S * R L P G R S S L P C C - c R T P H F G Y N K R R P A T L C A P R * A E G C L A D L H S L V A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d Y S R R M K S V I L P S W C C K T R R S S S F A A Q C I K V G K N - e M R V G * K P Y L L L L G A V S Q A G L H A S P Q R A S R * E R T A - f V F A E N Q I C Y S S V L L V K H A S I L Q L S G P L D E S G Q Q - NgoAIV Eco57I | | ACGACATCGACGCCGGCAAGCTGAAGGCTGTTTCATACAAGCCTGGCAGCCGAGGCCCCAAGGAAGCTGATGAACTGAGTGAGAAGGTCGGGTACATGCA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TGCTGTAGCTGCGGCCGTTCGACTTCCGACAAAGTATGTTCGGACCGTCGGCTCCGGGGTTCCTTCGACTACTTGACTCACTCTTCCAGCCCATGTACGT a D I D A G K L K A V S Y K P G S R G P K E A D E L S E K V G Y M Q - b T T S T P A S * R L F H T S L A A E A P R K L M N * V R R S G T C R - c R H R R R Q A E G C F I Q A W Q P R P Q G S * * T E * E G R V H A - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d C S M S A P L S F A T E Y L G P L R P G L S A S S S L S F T P Y M C - e R C R R R C A S P Q K M C A Q C G L G W P L Q H V S H S P R T C A - f V V D V G A L Q L S N * V L R A A S A G L F S I F Q T L L D P V H - EarI | GACCCACGGTTACATCTGGATACCGCCCACCCTTGCATAGAGTACCTCCCTCGATCCTTGTAGGTTTGTTTAGCTAGGAAGAGTGAAAGTATCACGGATA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CTGGGTGCCAATGTAGACCTATGGCGGGTGGGAACGTATCTCATGGAGGGAGCTAGGAACATCCAAACAAATCGATCCTTCTCACTTTCATAGTGCCTAT a T H G Y I W I P P T L A * S T S L D P C R F V * L G R V K V S R I - b P T V T S G Y R P P L H R V P P S I L V G L F S * E E * K Y H G * - c D P R L H L D T A H P C I E Y L P R S L * V C L A R K S E S I T D K - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d V W P * M Q I G G V R A Y L V E R S G Q L N T * S P L T F T D R I - e S G R N C R S V A W G Q M S Y R G R D K Y T Q K A L F L S L I V S - f L G V T V D P Y R G G K C L T G G E I R T P K N L * S S H F Y * P Y - BspMI SmaI | BsaBI SnaBI SrfI | | | | | AAAATCTTACGTATNTTAGCTGTACCTGCCCGGGC 601 ---------+---------+---------+----- 635 TTTTAGAATGCATANAATCGACATGGACGGGCCCG a K I L R ? L A V P A R - b K S Y V ? * L Y L P G - c N L T Y ? S C T C P G - 601 ---------+---------+---------+----- 635 d F I K R I ? A T G A R A - e L F R V Y ? L Q V Q G P - f F D * T ? * S Y R G P - Enzymes that do cut: AceIII Bce83I BglII BpmI BsaI BsaBI BsbI BseRI BsgI BspMI BsrGI DraI DraIII EagI EarI Eco57I NdeI NgoAIV SmaI SnaBI SrfI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BcgI BclI BfiI BglI BplI Bpu10I Bpu1102I BsaXI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrBI BsrDI BssHII BssSI Bst1107I BstEII BstXI Bsu36I ClaI DrdI DrdII EciI Eco47III EcoNI EcoRI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SpeI SphI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI