(Linear) MAP of: ./Fgr-S_1_A02_T7.seq check: 7635 from: 1 to: 919 Fgr-S_1_A02_T7 919 122 171 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. XhoI SphI| EcoRV EcoRI SanDI NsiI ||BsrBI PvuI | PstI| EagI Bce83I | | || | | | || | | CGGAATGGAAATTGGGACCCTCTATAATGCATGCTCGAGCGGCTCGTCAATGCGATCGGATATCTGCAGAATTCGGCTTGAGCGTGGTCGCGGCCGAGGT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GCCTTACCTTTAACCCTGGGAGATATTACGTACGAGCTCGCCGAGCAGTTACGCTAGCCTATAGACGTCTTAAGCCGAACTCGCACCAGCGCCGGCTCCA a R N G N W D P L * C M L E R L V N A I G Y L Q N S A * A W S R P R L - b G M E I G T L Y N A C S S G S S M R S D I C R I R L E R G R G R G - c E W K L G P S I M H A R A A R Q C D R I S A E F G L S V V A A E V - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d S H F N P G E I I C A R A A R * H S R I D A S N P K L T T A A S T - e P I S I P V R * L A H E L P E D I R D S I Q L I R S S R P R P R P - f F P F Q S G R Y H M S S R S T L A I P Y R C F E A Q A H D R G L - EcoNI | TATTTTTTTTTTTTGTCTATGTCCTATTTCGGCTTTTCCCCTGTTCAAAAGAAAAATACAACTTCCACCTTAAACAGGATTCATTTTCGGTAACATGGAA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ATAAAAAAAAAAAACAGATACAGGATAAAGCCGAAAAGGGGACAAGTTTTCTTTTTATGTTGAAGGTGGAATTTGTCCTAAGTAAAAGCCATTGTACCTT a F F F F V Y V L F R L F P C S K E K Y N F H L K Q D S F S V T W K - b Y F F F L S M S Y F G F S P V Q K K N T T S T L N R I H F R * H G N - c I F F F C L C P I S A F P L F K R K I Q L P P * T G F I F G N M E - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d I K K K Q R H G I E A K G R N L L F I C S G G * V P N M K P L M S - e * K K K K D I D * K P K E G T * F F F V V E V K F L I * K R Y C P - f N N K K K T * T R N R S K G Q E F S F Y L K W R L C S E N E T V H F - NsiI Bpu1102I BsbI BspMI | | | | ACTAAGCCAAGAGGTGATGGAGTGGCGCTTTTCAGGAGCCATTGGGAACTTAATCTGTATGCATCACCAACTGCTGAGCCAACACCTGCCGGGCGGTCGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TGATTCGGTTCTCCACTACCTCACCGCGAAAAGTCCTCGGTAACCCTTGAATTAGACATACGTAGTGGTTGACGACTCGGTTGTGGACGGCCCGCCAGCG a L S Q E V M E W R F S G A I G N L I C M H H Q L L S Q H L P G G R - b * A K R * W S G A F Q E P L G T * S V C I T N C * A N T C R A V A - c T K P R G D G V A L F R S H W E L N L Y A S P T A E P T P A G R S L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d V L G L P S P T A S K L L W Q S S L R Y A D G V A S G V G A P R D - e F * A L L H H L P A K * S G N P V * D T H M V L Q Q A L V Q R A T A - f S L W S T I S H R K E P A M P F K I Q I C * W S S L W C R G P P R - BpmI BamHI | SacI HindIII DrdII | | | | | TCAAAAGCCCAATGCAGCCCACTGGAGGCCGTTACTAATGGATCCGAGCTCGGGACCAAGCTTGGCCGAATCATGGGCCTAGCTGGTTCCTGTGTGAAAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AGTTTTCGGGTTACGTCGGGTGACCTCCGGCAATGATTACCTAGGCTCGAGCCCTGGTTCGAACCGGCTTAGTACCCGGATCGACCAAGGACACACTTTT a S K A Q C S P L E A V T N G S E L G T K L G R I M G L A G S C V K M - b Q K P N A A H W R P L L M D P S S G P S L A E S W A * L V P V * K - c K S P M Q P T G G R Y * W I R A R D Q A W P N H G P S W F L C E N - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S L L G I C G V P P R * * H I R A R S W A Q G F * P G L Q N R H S F - e * F G L A A W Q L G N S I S G L E P G L K A S D H A * S T G T H F - f E F A W H L G S S A T V L P D S S P V L S P R I M P R A P E Q T F - BsrBI SmaI VspI | | | TGGTATCCGCTCACAATTCCACACAACATACCAGCCGGAAGCCTAAAGTGTAAAACCCGGGGGGCCTAATGAGTGAGCTAACTCACATTAATTGCGGTGC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ACCATAGGCGAGTGTTAAGGTGTGTTGTATGGTCGGCCTTCGGATTTCACATTTTGGGCCCCCCGGATTACTCACTCGATTGAGTGTAATTAACGCCACG a V S A H N S T Q H T S R K P K V * N P G G L M S E L T H I N C G A - b W Y P L T I P H N I P A G S L K C K T R G A * * V S * L T L I A V R - c G I R S Q F H T T Y Q P E A * S V K P G G P N E * A N S H * L R C - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P I R E C N W V V Y W G S A * L T F G P P G L S H A L E C * N R H - e H Y G S V I G C L M G A P L R F H L V R P A * H T L * S V N I A T - f I T D A * L E V C C V L R F G L T Y F G P P R I L S S V * M L Q P A - VspI SacII | | GCTCACTGCCCGCTTTCCAAGCGGGAAACCTGTCGTGCCCGCTGCATTAATGAATCGGGCCACCCGCGGGGAGAAGCCGGTTGCCTATTGGGAGATGTTG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CGAGTGACGGGCGAAAGGTTCGCCCTTTGGACAGCACGGGCGACGTAATTACTTAGCCCGGTGGGCGCCCCTCTTCGGCCAACGGATAACCCTCTACAAC a L T A R F P S G K P V V P A A L M N R A T R G E K P V A Y W E M L - b S L P A F Q A G N L S C P L H * * I G P P A G R S R L P I G R C C - c A H C P L S K R E T C R A R C I N E S G H P R G E A G C L L G D V A - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d A * Q G S E L R S V Q R A R Q M L S D P W G R P S A P Q R N P S T - e R E S G A K W A P F R D H G S C * H I P G G A P L L R N G I P L H Q - f S V A R K G L P F G T T G A A N I F R A V R P S F G T A * Q S I N - BsrBI EcoRI | | CGCTTCCTTGCTCACTGACTTGCTGGGCTTGGGTCATTGGCTGGGGGGAGCGGGTTCAACTTACTCCAAGGCGGGAATTCCGTTATTCACAAAAATAGGG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCGAAGGAACGAGTGACTGAACGACCCGAACCCAGTAACCGACCCCCCTCGCCCAAGTTGAATGAGGTTCCGCCCTTAAGGCAATAAGTGTTTTTATCCC a R F L A H * L A G L G S L A G G S G F N L L Q G G N S V I H K N R G - b A S L L T D L L G L G H W L G G A G S T Y S K A G I P L F T K I G - c L P C S L T C W A W V I G W G E R V Q L T P R R E F R Y S Q K * G - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d A S G Q E S V Q Q A Q T M P Q P S R T * S V G L R S N R * E C F Y P - e A E K S V S K S P K P * Q S P P A P E V * E L A P I G N N V F I P - f R K R A * Q S A P S P D N A P P L P N L K S W P P F E T I * L F L - BspLU11I NgoAIV EciI | | | GATGACCCCCGAAAAAACATGTGAGCAAAAGGCCAACAAAAGGGCAGCAACCGGGCAAAAGGCCGGCTGCTTGGCGTTATTACGTTAGGCTCCGCCCCCC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CTACTGGGGGCTTTTTTGTACACTCGTTTTCCGGTTGTTTTCCCGTCGTTGGCCCGTTTTCCGGCCGACGAACCGCAATAATGCAATCCGAGGCGGGGGG a * P P K K H V S K R P T K G Q Q P G K R P A A W R Y Y V R L R P P - b D D P R K N M * A K G Q Q K G S N R A K G R L L G V I T L G S A P L - c M T P E K T C E Q K A N K R A A T G Q K A G C L A L L R * A P P P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d I V G S F V H S C F A L L L A A V P C F A P Q K A N N R * A G G G - e S S G R F F M H A F P W C F P L L R A F P R S S P T I V N P E A G - f P H G G F F C T L L L G V F P C C G P L L G A A Q R * * T L S R G G - BsmI Eco57I | HgiEII HgiEII | | | | TTGACAGAATGCCCAAAATTCCCGCTTCAGGTTAAAAGGGGGCGAAACCCCCACAGGACTTTGAAGAAACCCCCGGCGGTGCCCCTTGAGAAACCTCCCC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 AACTGTCTTACGGGTTTTAAGGGCGAAGTCCAATTTTCCCCCGCTTTGGGGGTGTCCTGAAACTTCTTTGGGGGCCGCCACGGGGAACTCTTTGGAGGGG a * Q N A Q N S R F R L K G G E T P T G L * R N P R R C P L R N L P - b D R M P K I P A S G * K G A K P P Q D F E E T P G G A P * E T S P - c L T E C P K F P L Q V K R G R N P H R T L K K P P A V P L E K P P L - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d K V S H G F N G S * T L L P R F G W L V K F F G G A T G R S F G G - e R S L I G L I G A E P * F P A F G G C S K S S V G P P A G Q S V E G - f Q C F A W F E R K L N F P P S V G V P S Q L F G R R H G K L F R G - Bce83I XhoI | | TGGTGGCCCCCCTCTCGAG 901 ---------+--------- 919 ACCACCGGGGGGAGAGCTC a W W P P S R - b G G P P L E - c V A P L S - 901 ---------+--------- 919 d R T A G R E L - e P P G G R S - f Q H G G E R - Enzymes that do cut: BamHI Bce83I BpmI Bpu1102I BsbI BsmI BspLU11I BspMI BsrBI DrdII EagI EciI Eco57I EcoNI EcoRI EcoRV HgiEII HindIII NgoAIV NsiI PstI PvuI SacI SacII SanDI SmaI SphI VspI XhoI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BbsI BcgI BclI BfiI BglI BglII BplI Bpu10I BsaI BsaBI BsaXI BseRI BsgI BsiWI BsmBI BspEI BspGI BsrDI BsrGI BssHII BssSI Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI EarI Eco47III FseI FspI HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NheI NotI NruI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuII RcaI RsrII SalI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SpeI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I XbaI XcmI XmnI