(Linear) MAP of: ./Fgr-S_1_A05_T7.seq check: 6249 from: 1 to: 897 Fgr-S_1_A05_T7 897 44 615 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EcoRV SphI BsaBI | EcoRI SanDI NsiI | BstXI | | PstI|Bpu1102I EagI BplI | | | | | | || | | | GGGATTTGATATTGGGACCCTCTAGNATGCATGCTCGANCGCGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTCC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCCTAAACTATAACCCTGGGAGATCNTACGTACGAGCTNGCGCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCAGG a G I * Y W D P L ? C M L ? R A A S V M D I C R I R L S V V A A E V R - b G F D I G T L * ? A C S ? A P P V * W I S A E F G L A W S R P R S - c D L I L G P S ? M H A R ? R R Q C D G Y L Q N S A * R G R G R G P - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d P N S I P V R * ? A H E ? A G G T H H I D A S N P K A H D R G L D - e I Q Y Q S G R ? H M S S R A A L T I S I Q L I R S L T T A A S T - f S K I N P G E L ? C A R ? R R W H S P Y R C F E A * R P R P R P G - BsaBI BsrBI BbsI BsgI BamHI | | | | | | GCTCCGGTGAGAATCCGTCGCCATGTCTTCCAGCGAGGTCGCCTGCACCCTTGCCGCCCTCATCCTCCACGATGACGGGATCCCCATCACTTCCGAGAAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGAGGCCACTCTTAGGCAGCGGTACAGAAGGTCGCTCCAGCGGACGTGGGAACGGCGGGAGTAGGAGGTGCTACTGCCCTAGGGGTAGTGAAGGCTCTTC a S G E N P S P C L P A R S P A P L P P S S S T M T G S P S L P R R - b A P V R I R R H V F Q R G R L H P C R P H P P R * R D P H H F R E D - c L R * E S V A M S S S E V A C T L A A L I L H D D G I P I T S E K - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d A G T L I R R W T K W R P R R C G Q R G * G G R H R S G W * K R S - e R E P S F G D G H R G A L D G A G K G G E D E V I V P D G D S G L L - f S R H S D T A M D E L S T A Q V R A A R M R W S S P I G M V E S F - EarI EarI BseRI NruI StuI SapI BstXI| BpmI | | | | || | | ATCGCGACGGTGGTGAAGGCTGCCGGAATCAAGGTTGAGGCCTACTGGCCCGCGCTCTTCGCCAAGCTCCTGGAGAAGAGGAGCGTCGATGACCTCATCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TAGCGCTGCCACCACTTCCGACGGCCTTAGTTCCAACTCCGGATGACCGGGCGCGAGAAGCGGTTCGAGGACCTCTTCTCCTCGCAGCTACTGGAGTAGG a S R R W * R L P E S R L R P T G P R S S P S S W R R G A S M T S S - b R D G G E G C R N Q G * G L L A R A L R Q A P G E E E R R * P H P - c I A T V V K A A G I K V E A Y W P A L F A K L L E K R S V D D L I L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S R S P P S P Q R F * P Q P R S A R A R R W A G P S S S R R H G * G - e D R R H H L S G S D L N L G V P G R E E G L E Q L L P A D I V E D - f I A V T T F A A P I L T S A * Q G A S K A L S R S F L L T S S R M - AlwNI EarI BpmI PvuII | EarI Eco57I | | | | | TTTCCGTCGGATCTGGTGGAGGTGGTGCTCCAGCTGCTGCTGCTGCTGCCCCGGCTGCTGGTGGTGCTGCTGCCGCTGAAGAGAAGAAGGAAGAAAAGAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AAAGGCAGCCTAGACCACCTCCACCACGAGGTCGACGACGACGACGACGGGGCCGACGACCACCACGACGACGGCGACTTCTCTTCTTCCTTCTTTTCTT a F P S D L V E V V L Q L L L L L P R L L V V L L P L K R R R K K R K - b F R R I W W R W C S S C C C C C P G C W W C C C R * R E E G R K E - c S V G S G G G G A P A A A A A A P A A G G A A A A E E K K E E K K - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d K R R I Q H L H H E L Q Q Q Q Q G P Q Q H H Q Q R Q L S S P L F S - e K G D S R T S T T S W S S S S S G R S S T T S S G S F L L L F F L - f R E T P D P P P P A G A A A A A A G A A P P A A A A S S F F S S F F - EarI Eco57I XcmI | | | AGAAGAGGCCAAGGAAGAGAGCGATGATGACATGGGCTTCAGCTTGTTCGACTAAGCTGTTCAATTCCAGTTCTCCTGTGGGTTCTTCTATGCGAAAGAC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TCTTCTCCGGTTCCTTCTCTCGCTACTACTGTACCCGAAGTCGAACAAGCTGATTCGACAAGTTAAGGTCAAGAGGACACCCAAGAAGATACGCTTTCTG a K R P R K R A M M T W A S A C S T K L F N S S S P V G S S M R K T - b R R G Q G R E R * * H G L Q L V R L S C S I P V L L W V L L C E R L - c E E A K E E S D D D M G F S L F D * A V Q F Q F S C G F F Y A K D - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d L L P W P L S R H H C P S * S T R S L Q E I G T R R H T R R H S L - e F F L G L F L A I I V H A E A Q E V L S N L E L E G T P E E I R F V - f S S A L S S L S S S M P K L K N S * A T * N W N E Q P N K * A F S - EagI NotI BglI| BspMI|| SmaI ||| BsrDI SrfI |||BsrBI | | ||| | TTGTCTTATGTGCTTTTAGGTCGAATTTTGAAGATTTATTATGTTATGCTGTTTGAGACTAAGTATCTGTGCAATGAGTACCTGCCCGGGCGGCCGCTCG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AACAGAATACACGAAAATCCAGCTTAAAACTTCTAAATAATACAATACGACAAACTCTGATTCATAGACACGTTACTCATGGACGGGCCCGCCGGCGAGC a C L M C F * V E F * R F I M L C C L R L S I C A M S T C P G G R S - b V L C A F R S N F E D L L C Y A V * D * V S V Q * V P A R A A A R - c L S Y V L L G R I L K I Y Y V M L F E T K Y L C N E Y L P G R P L E - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S T K H A K L D F K S S K N H * A T Q S * T D T C H T G A R A A A R - e Q R I H K * T S N Q L N I I N H Q K L S L I Q A I L V Q G P P R E - f K D * T S K P R I K F I * * T I S N S V L Y R H L S Y R G P R G S - HindIII EcoRI BstXI EagI SpeI BamHI SacI KpnI | | | | | | | | | AAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATGG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TTTCGGCTTAAGGTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACCGCATTAGTACCAGTATCGACAAAGGACACACTTTACC a K A E F Q H T G G R Y * W I R A R Y Q A W R N H G H S C F L C E M V - b K P N S S T L A A V T S G S E L G T K L G V I M V I A V S C V K W - c S R I P A H W R P L L V D P S S V P S L A * S W S * L F P V * N G - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d F G F E L V S A A T V L P D S S P V L S P T I M T M A T E Q T F H - e F A S N W C V P P R * * H I R A R Y W A Q R L * P * L Q K R H S I - f S L R I G A C Q R G N S T S G L E T G L K A Y D H D Y S N G T H F P - BsrBI | TATCCGCTCACAATCCACACAACATACGAGCCCGGAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTATTTGCGTTGCGCTC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 ATAGGCGAGTGTTAGGTGTGTTGTATGCTCGGGCCTCGTATTTCACATTTCGGACCCCACGGATTACTCACTCGATTGAGTGTAATAAACGCAACGCGAG a S A H N P H N I R A R S I K C K A W G A * * V S * L T L F A L R S - b Y P L T I H T T Y E P G A * S V K P G V P N E * A N S H Y L R C A H - c I R S Q S T Q H T S P E H K V * S L G C L M S E L T H I I C V A L - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d Y G S V I W V V Y S G P A Y L T F G P T G L S H A L E C * K R Q A - e T D A * L G C L M R A R L M F H L A Q P A * H T L * S V N N A N R E - f I R E C D V C C V L G S C L T Y L R P H R I L S S V * M I Q T A S - PvuII EcoRI | | ACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCTTTAATGAATTCGGCCACGCGCGGGGAGAAGGCGGTTTGCGTATTGGGCGCTCCTT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+------- 897 TGACGGGCGAAAGGTCAGCCCTTTGGACAGCACGGTCGACGAAATTACTTAAGCCGGTGCGCGCCCCTCTTCCGCCAAACGCATAACCCGCGAGGAA a L P A F Q S G N L S C Q L L * * I R P R A G R R R F A Y W A L L - b C P L S S R E T C R A S C F N E F G H A R G E G G L R I G R S - c T A R F P V G K P V V P A A L M N S A T R G E K A V C V L G A P - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+------- 897 d * Q G S E L R S V Q R A L Q K L S N P W A R P S P P K R I P R E K - e S G A K W D P F R D H W S S * H I R G R A P L L R N A Y Q A S R - f V A R K G T P F G T T G A A K I F E A V R P S F A T Q T N P A G - Enzymes that do cut: AlwNI BamHI BbsI BglI BplI BpmI Bpu1102I BsaBI BseRI BsgI BspMI BsrBI BsrDI BstXI EagI EarI Eco57I EcoRI EcoRV HindIII KpnI NotI NruI NsiI PstI PvuII SacI SanDI SapI SmaI SpeI SphI SrfI StuI XcmI Enzymes that do not cut: AatII AceIII AflII AhdI ApaI ApaBI ApaLI AscI AvrII Bce83I BcgI BclI BfiI BglII Bpu10I BsaI BsaXI BsbI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrGI BssHII BssSI Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SalI ScaI SexAI SfiI SgfI SgrAI SnaBI Sse8387I Sse8647I SspI SwaI Tth111I VspI XbaI XhoI XmnI