(Linear) MAP of: ./Fgr-S_1_A07_T7.seq check: 1847 from: 1 to: 881 Fgr-S_1_A07_T7 881 30 702 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EagI NotI EcoRV BsrBI| BsaBI | EcoRI SanDI XhoI || BstXI | | PstI|Bpu1102I EagI | | || | | | || | | AGGGACTTGATATTGGGACCCTCTANATGCTGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTAGTG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 TCCCTGAACTATAACCCTGGGAGATNTACGACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATCAC a R D L I L G P S ? C C S S G R Q C D G Y L Q N S A * R G R G R G S G - b G T * Y W D P L ? A A R A A A S V M D I C R I R L S V V A A E V V - c G L D I G T L ? M L L E R P P V * W I S A E F G L A W S R P R * W - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d S K I N P G E ? H Q E L P R W H S P Y R C F E A * R P R P R P L - e P S S I P V R * ? S S S R G G T H H I D A S N P K A H D R G L Y H - f P V Q Y Q S G R ? A A R A A A L T I S I Q L I R S L T T A A S T T - Pfl1108I Eco57I StuI | BclI | Sse8647I | | | | | GGTCAAAACAACTGAAGGCCTACGAGATGTGATCAACCGGCACTACCCTGAAATTACTGCCAACTGGATGAGGTCCTCTAGTGCTTTCTCTGTGTGGGAT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CCAGTTTTGTTGACTTCCGGATGCTCTACACTAGTTGGCCGTGATGGGACTTTAATGACGGTTGACCTACTCCAGGAGATCACGAAAGAGACACACCCTA a S K Q L K A Y E M * S T G T T L K L L P T G * G P L V L S L C G M - b G Q N N * R P T R C D Q P A L P * N Y C Q L D E V L * C F L C V G C - c V K T T E G L R D V I N R H Y P E I T A N W M R S S S A F S V W D - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d P D F C S F A * S I H D V P V V R F N S G V P H P G R T S E R H P I - e T L V V S P R R S T I L R C * G S I V A L Q I L D E L A K E T H S - f P * F L Q L G V L H S * G A S G Q F * Q W S S S T R * H K R Q T P - SpeI NdeI SphI | | | GCAGACTACTAGTGCAAAAATAAAAGGCCCCCTGCCATATGTAGTGCATGCAATTTGGCAAGTTCTATGAAGTATCATTTGTTCACAAAATTATTGTGTT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGTCTGATGATCACGTTTTTATTTTCCGGGGGACGGTATACATCACGTACGTTAAACCGTTCAAGATACTTCATAGTAAACAAGTGTTTTAATAACACAA a Q T T S A K I K G P L P Y V V H A I W Q V L * S I I C S Q N Y C V - b R L L V Q K * K A P C H M * C M Q F G K F Y E V S F V H K I I V F - c A D Y * C K N K R P P A I C S A C N L A S S M K Y H L F T K L L C L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d C V V L A F I F P G R G Y T T C A I Q C T R H L I M Q E C F * Q T - e A S * * H L F L L G G A M H L A H L K A L E I F Y * K N V F N N H - f H L S S T C F Y F A G Q W I Y H M C N P L N * S T D N T * L I I T N - EagI NotI BglI| BspMI|| SmaI ||| NdeI SrfI |||BsrBI | | ||| | TGTTCAGTGTAAATAAATATACTTAAATATGTCAGTGTAACATATGTAATAGGATTCATTATTGCATGACACAAGTTGTACCTGCCCGGGCGGCCGCTCG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 ACAAGTCACATTTATTTATATGAATTTATACAGTCACATTGTATACATTATCCTAAGTAATAACGTACTGTGTTCAACATGGACGGGCCCGCCGGCGAGC a C S V * I N I L K Y V S V T Y V I G F I I A * H K L Y L P G R P L E - b V Q C K * I Y L N M S V * H M * * D S L L H D T S C T C P G G R S - c F S V N K Y T * I C Q C N I C N R I H Y C M T Q V V P A R A A A R - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d Q E T Y I F I S L Y T L T V Y T I P N M I A H C L N Y R G P R G S - e K N L T F L Y V * I H * H L M H L L I * * Q M V C T T G A R A A A R - f T * H L Y I Y K F I D T Y C I Y Y S E N N C S V L Q V Q G P P R E - HindIII EcoRI BstXI EagI SpeI BamHI SacI KpnI | | | | | | | | | AAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TTTCGGCTTAAGGTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACCGCATTAGTACCAGTATCGACAAAGGACACACTTTAAC a S R I P A H W R P L L V D P S S V P S L A * S W S * L F P V * N C - b K A E F Q H T G G R Y * W I R A R Y Q A W R N H G H S C F L C E I V - c K P N S S T L A A V T S G S E L G T K L G V I M V I A V S C V K L - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d S L R I G A C Q R G N S T S G L E T G L K A Y D H D Y S N G T H F Q - e F G F E L V S A A T V L P D S S P V L S P T I M T M A T E Q T F N - f F A S N W C V P P R * * H I R A R Y W A Q R L * P * L Q K R H S I - BsrBI VspI | | TTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AATAGGCGAGTGTTAAGGTGTGTTGTATGCTCGGCCTTCGTATTTCACATTTCGGACCCCACGGATTACTCACTCGATTGAGTGTAATTAACGCAACGCG a Y P L T I P H N I R A G S I K C K A W G A * * V S * L T L I A L R - b I R S Q F H T T Y E P E A * S V K P G V P N E * A N S H * L R C A - c L S A H N S T Q H T S R K H K V * S L G C L M S E L T H I N C V A L - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d * G S V I G C L M R A P L M F H L A Q P A * H T L * S V N I A N R - e N D A * L E V C C V L R F C L T Y L R P H R I L S S V * M L Q T A - f T I R E C N W V V Y S G S A Y L T F G P T G L S H A L E C * N R Q A - EarI PvuII VspI BsaXI SapI | | | | TCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AGTGACGGGCGAAAGGTCAGCCCTTTGGACAGCACGGTCGACGTAATTACTTAGCCGGTTGCGCGCCCCTCTCCGCCAAACGCATAACCCGCGAGAAGGC a S L P A F Q S G N L S C Q L H * * I G Q R A G R G G L R I G R S S A - b H C P L S S R E T C R A S C I N E S A N A R G E A V C V L G A L P - c T A R F P V G K P V V P A A L M N R P T R G E R R F A Y W A L F R - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d E S G A K W D P F R D H W S C * H I P W R A P L P P K R I P R E E - e S V A R K G T P F G T T G A A N I F R G V R P S L R N A Y Q A S K R - f * Q G S E L R S V Q R A L Q M L S D A L A R P S A T Q T N P A R G - Bst1107I BsrBI AceIII | | | | CTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGNTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCNGGTATACGGTTATCCACAGAATCAGGGGA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GAAGGAGCGAGTGACTGAGCGACGCGAGCCAGCNAGCCGACGCCGCTCGCCATAGTCGAGTGAGTTTCCGNCCATATGCCAATAGGTGTCTTAGTCCCCT a S S L T D S L R S V ? R L R R A V S A H S K A G I R L S T E S G D - b L P R S L T R C A R S ? G C G E R Y Q L T Q R ? V Y G Y P Q N Q G I - c F L A H * L A A L G R S A A A S G I S S L K G ? Y T V I H R I R G - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d A E E S V S E S R E T ? R S R R A T D A * E F A P I R N D V S D P S - e K R A * Q S A A S P R ? A A A L P I L E S L P ? Y V T I W L I L P - f S G R E S V R Q A R D ? P Q P S R Y * S V * L ? T Y P * G C F * P - BspLU11I | TAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCANAATGCCAGGAAACCGTAAAAGGCCCGCGTTGCTGGCGTTTTTTC 801 ---------+---------+---------+---------+---------+---------+---------+---------+- 881 ATTGCGTCCTTTCTTGTACACTCGTTTTCCGGTCGTNTTACGGTCCTTTGGCATTTTCCGGGCGCAACGACCGCAAAAAAG a N A G K N M * A K G Q ? N A R K P * K A R V A G V F - b T Q E R T C E Q K A S ? M P G N R K R P A L L A F F - c * R R K E H V S K R P A ? C Q E T V K G P R C W R F F - 801 ---------+---------+---------+---------+---------+---------+---------+---------+- 881 d L A P F F M H A F P W C ? A L F G Y F A R T A P T K E - e Y R L F S C T L L L G A ? H W S V T F P G R Q Q R K K - f I V C S L V H S C F A L ? I G P F R L L G A N S A N K - Enzymes that do cut: AceIII BamHI BclI BglI Bpu1102I BsaBI BsaXI BspLU11I BspMI BsrBI Bst1107I BstXI EagI EarI Eco57I EcoRI EcoRV HindIII KpnI NdeI NotI Pfl1108I PstI PvuII SacI SanDI SapI SmaI SpeI SphI SrfI Sse8647I StuI VspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BfiI BglII BplI BpmI Bpu10I BsaI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BsrDI BsrGI BssHII BssSI BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NgoAIV NheI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SalI ScaI SexAI SfiI SgfI SgrAI SnaBI Sse8387I SspI SwaI Tth111I XbaI XcmI XmnI