(Linear) MAP of: ./Fgr-S_1_B03_T7.seq check: 5735 from: 1 to: 940 Fgr-S_1_B03_T7 940 90 286 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EcoRV SphI EagI BsaBI | | | | | GCCTCGGAGGGCNCGGTGAAGGGGGAGGCGGGTTTCTATANNGNNAGGCNATGTATTGCGACCCTCTATTTGCATGCTCGACGGCCGCCGTGTGATGGAT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGGAGCCTCCCGNGCCACTTCCCCCTCCGCCCAAAGATATNNCNNTCCGNTACATAACGCTGGGAGATAAACGTACGAGCTGCCGGCGGCACACTACCTA a A S E G ? V K G E A G F Y ? ? R ? C I A T L Y L H A R R P P C D G Y - b P R R A R * R G R R V S I ? ? G ? V L R P S I C M L D G R R V M D - c L G G ? G E G G G G F L ? ? ? A M Y C D P L F A C S T A A V * W I - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P P ? P S P P P P N R Y ? ? A ? Y Q S G R N A H E V A A T H H I - e G R L A R H L P L R T E I ? ? P ? T N R G E I Q M S S P R R T I S - f E S P ? T F P S A P K * ? ? L ? H I A V R * K C A R R G G H S P - EcoRI PstI|Bpu1102I EagI || | | ATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA a L Q N S A * R G R G R G F F F F F V F F F F F F F F F F F F F F F - b I C R I R L S V V A A E V F F F F L F F F F F F F F F F F F F F F F - c S A E F G L A W S R P R F F F F F C F F F F F F F F F F F F F F F - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d D A S N P K A H D R G L N K K K K Q K K K K K K K K K K K K K K K - e I Q L I R S L T T A A S T K K K K K N K K K K K K K K K K K K K K - f Y R C F E A * R P R P R P K K K K K T K K K K K K K K K K K K K K K - DraI BsmI | | TTTTTTTTTTTTTTAACCCCCAAAAAATTTTGGTTTTAAAAAGGCCCCTTAATCCCTTTCAAATTTTTTTTTTTTTTTTGGGCATTCCAAAGGAAAAAAA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AAAAAAAAAAAAAATTGGGGGTTTTTTAAAACCAAAATTTTTCCGGGGAATTAGGGAAAGTTTAAAAAAAAAAAAAAAACCCGTAAGGTTTCCTTTTTTT a F F F F * P P K N F G F K K A P * S L S N F F F F F G H S K G K K - b F F F F N P Q K I L V L K R P L N P F Q I F F F F L G I P K E K K - c F F F F L T P K K F W F * K G P L I P F K F F F F F W A F Q R K K N - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d K K K K K V G L F N Q N * F P G K I G K L N K K K K Q A N W L F F - e K K K K K L G W F I K T K F L G R L G K * I K K K K K P M G F S F F - f K K K K * G G F F K P K L F A G * D R E F K K K K K P C E L P F F - SmaI ApaI ApaI | | | ACAACCCCCCCATTAACCCCAAAAAAATCGTCCTTTGGGAATAAAACCTCCCCCGGGGGGCCCTTAAAAACCCAATTTCCCCCCCCTTGGGGCCCTTATT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TGTTGGGGGGGTAATTGGGGTTTTTTTAGCAGGAAACCCTTATTTTGGAGGGGGCCCCCCGGGAATTTTTGGGTTAAAGGGGGGGGAACCCCGGGAATAA a T T P P L T P K K S S F G N K T S P G G P L K T Q F P P P W G P Y F - b Q P P H * P Q K N R P L G I K P P P G G P * K P N F P P L G A L I - c N P P I N P K K I V L W E * N L P R G A L K N P I S P P L G P L F - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d F L G G M L G L F I T R Q S Y F R G R P A R L F G I E G G K P G K N - e C G G W * G W F F R G K P I F G G G P P G * F G L K G G R P A R I - f V V G G N V G F F D D K P F L V E G P P G K F V W N G G G Q P G * - BamHI KpnI | | TTTGGATCCCAACTCGGTACCAAACTTGGGGAAAATATGGGCATAACTTTTTCCTTTGGAAAAATGTTTTCCCCTCCCAATTCCACCCAAAATTCCAACC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AAACCTAGGGTTGAGCCATGGTTTGAACCCCTTTTATACCCGTATTGAAAAAGGAAACCTTTTTACAAAAGGGGAGGGTTAAGGTGGGTTTTAAGGTTGG a W I P T R Y Q T W G K Y G H N F F L W K N V F P S Q F H P K F Q P - b F G S Q L G T K L G E N M G I T F S F G K M F S P P N S T Q N S N R - c L D P N S V P N L G K I W A * L F P L E K C F P L P I P P K I P T - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d K S G L E T G F K P F I H A Y S K G K S F H K G R G I G G L I G V - e K P D W S P V L S P S F I P M V K E K P F I N E G G L E V W F E L - f K Q I G V R Y W V Q P F Y P C L K K R Q F F T K G E W N W G F N W G - DraI SmaI EcoNI ApaI | | | | GGAAACTTAAAATTTAAAACCCGGGGGGCCTAATTAAGGAACCTACTCCCCTTTATTGGGGGGGCCCCCCTTCCCCCTTTCCAAGCGGAAAACCCTTCTG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CCTTTGAATTTTAAATTTTGGGCCCCCCGGATTAATTCCTTGGATGAGGGGAAATAACCCCCCCGGGGGGAAGGGGGAAAGGTTCGCCTTTTGGGAAGAC a E T * N L K P G G P N * G T Y S P L L G G P P F P L S K R K T L L - b K L K I * N P G G L I K E P T P L Y W G G P P S P F P S G K P F W - c G N L K F K T R G A * L R N L L P F I G G A P L P P F Q A E N P S G - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d P F K F N L V R P A * N L F R S G K I P P A G R G G K W A S F G E - e R F S L I * F G P P R I L S G V G R * Q P P G G E G K G L P F G K Q - f S V * F K F G P P G L * P V * E G K N P P G G K G R E L R F V R R - PacI EciI SmaI BglI | | | | GCCCACTTAATTAAAAAATCCGCCCACCCCCGGGGAAAGGGGGTTTGCCTTTTGGGCGCTTTTTCCCTTCCTTACTCACTTAACTTCTTGGCTCGGGCGT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CGGGTGAATTAATTTTTTAGGCGGGTGGGGGCCCCTTTCCCCCAAACGGAAAACCCGCGAAAAAGGGAAGGAATGAGTGAATTGAAGAACCGAGCCCGCA a A H L I K K S A H P R G K G V C L L G A F S L P Y S L N F L A R A F - b P T * L K N P P T P G E R G F A F W A L F P F L T H L T S W L G R - c P L N * K I R P P P G K G G L P F G R F F P S L L T * L L G S G V - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P G S L * F I R G G G P F P P K G K P R K K G E K S V * S R P E P T - e G V * N F F G G V G P S L P N A K Q A S K G K R V * K V E Q S P R - f A W K I L F D A W G R P F P T Q R K P A K E R G * E S L K K A R A - TCGGGTGGGGGGAACGGTTTTTACTTTCTTAAAGGGGGGTAATACCGTTTTTCCCACAAATCGGGGGATAACCCCCGAAAAAAACATTTGGACCAAAAAG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AGCCCACCCCCCTTGCCAAAAATGAAAGAATTTCCCCCCATTATGGCAAAAAGGGTGTTTAGCCCCCTATTGGGGGCTTTTTTTGTAAACCTGGTTTTTC a G W G E R F L L S * R G V I P F F P Q I G G * P P K K T F G P K R - b S G G G N G F Y F L K G G * Y R F S H K S G D N P R K K H L D Q K G - c R V G G T V F T F L K G G N T V F P T N R G I T P E K N I W T K K - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d R T P P V T K V K K F P P L V T K G V F R P I V G S F F M Q V L F - e E P P P F P K * K R L P P Y Y R K E W L D P S L G R F F C K S W F - f N P H P S R N K S E * L P T I G N K G C I P P Y G G F F V N P G F L - GCCCCCAAATAGGCCCCCATAACCCCCTAAAAAAAGCGCCCCCTTTTTCGGCCTTTATATTCCTCATAGGCCCCCCCCCCCCCCTCTTAAACAAAAATTT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 CGGGGGTTTATCCGGGGGTATTGGGGGATTTTTTTCGCGGGGGAAAAAGCCGGAAATATAAGGAGTATCCGGGGGGGGGGGGGGAGAATTTGTTTTTAAA a P P N R P P * P P K K S A P F F G L Y I P H R P P P P P L K Q K F - b P Q I G P H N P L K K A P P F S A F I F L I G P P P P L L N K N F - c A P K * A P I T P * K K R P L F R P L Y S S * A P P P P S * T K I S - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d A G L Y A G M V G * F F R G R K R G K Y E E Y A G G G G E * V F I - e P G W I P G W L G R F F A G G K E A K I N R M P G G G G R K F L F K - f G G F L G G Y G G L F L A G K K P R * I G * L G G G G G R L C F N - CAAACAAAAAATCTCCCCCCTCTCAAATTTCCAAAGAGGG 901 ---------+---------+---------+---------+ 940 GTTTGTTTTTTAGAGGGGGGAGAGTTTAAAGGTTTCTCCC a Q T K N L P P L K F P K R - b K Q K I S P L S N F Q R G - c N K K S P P S Q I S K E - 901 ---------+---------+---------+---------+ 940 d E F L F D G G E * I E L S P - e L C F I E G R E F K W L P - f * V F F R G G R L N G F L - Enzymes that do cut: ApaI BamHI BglI Bpu1102I BsaBI BsmI DraI EagI EciI EcoNI EcoRI EcoRV KpnI PacI PstI SmaI SphI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BclI BfiI BglII BplI BpmI Bpu10I BsaI BsaXI BsbI BseRI BsgI BsiWI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII BssSI Bst1107I BstEII BstXI Bsu36I ClaI DraIII DrdI DrdII EarI Eco47III Eco57I FseI FspI HgiEII HindIII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SpeI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI