(Linear) MAP of: ./Fgr-S_1_B06_T7.seq check: 4548 from: 1 to: 895 Fgr-S_1_B06_T7 895 32 660 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EagI NotI EcoRV BsrBI| BsaBI | EcoRI SspI SanDI XhoI || BstXI | | PstI|Bpu1102I EagI KpnI | | | || | | | || | | | AGCAATATTGTATAGGGACCCTCTATTTGTCTGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 TCGTTATAACATATCCCTGGGAGATAAACAGACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGG a S N I V * G P S I C L L E R P P V * W I S A E F G L A W S R P R Y L - b A I L Y R D P L F V C S S G R Q C D G Y L Q N S A * R G R G R G T - c Q Y C I G T L Y L S A R A A A S V M D I C R I R L S V V A A E V P - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C Y Q I P V R * K D A R A A A L T I S I Q L I R S L T T A A S T G - e A I N Y L S G R N T Q E L P R W H S P Y R C F E A * R P R P R P V - f L I T Y P G E I Q R S S R G G T H H I D A S N P K A H D R G L Y - SpeI | TTCTGCAAATTCGACTAGTTCACCTGACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCTATATTCTCAATC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AAGACGTTTAAGCTGATCAAGTGGACTGTAATAAAGTGGTTCTGGATATTATGCTCGTTAGGGTAGGGGGTGAACTTGATGCGCTGGATATAAGAGTTAG a L Q I R L V H L T L F H Q D L * Y E Q S H P P L E L R D L Y S Q S - b F C K F D * F T * H Y F T K T Y N T S N P I P H L N Y A T Y I L N P - c S A N S T S S P D I I S P R P I I R A I P S P T * T T R P I F S I - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d E A F E V L E G S M I E G L G I I R A I G D G V Q V V R G I N E I - e K Q L N S * N V Q C * K V L V * L V L L G M G W K F * A V * I R L - f R R C I R S T * R V N N * W S R Y Y S C D W G G S S S R S R Y E * D - SalI | CCTACTTTCCTATTATATTGTTCAATACGTTCGCGGAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTCTTTTTTCGGA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GGATGAAAGGATAATATAACAAGTTATGCAAGCGCCTCTTAAAATACTTAAAGCAGCTGAGCTTCCCAACGGTAATCACAAAGAACTGAGAAAAAAGCCT a L L S Y Y I V Q Y V R G E F Y E F R R L E G L P L V F L D S F F G - b Y F P I I L F N T F A E N F M N F V D S K G C H * C F L T L F S E - c P T F L L Y C S I R S R R I L * I S S T R R V A I S V S * L F F R K - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G V K R N Y Q E I R E R L I K H I E D V R L T A M L T E Q S K K R - e G * K G I I N N L V N A S F K I F K T S E F P Q W * H K K V R K E S - f R S E * * I T * Y T R P S N * S N R R S S P N G N T N R S E K K P - StuI VspI EarI SanDI BsmI | | | | | AGCAAGGGGAAAAATAATGCCTAAATTCTAAACGAAAGTAGAAGTTCAAGGCCTAATTAATTTAATTATCTCTTCCATTCCAGGGACCCGAGAATGCCAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TCGTTCCCCTTTTTATTACGGATTTAAGATTTGCTTTCATCTTCAAGTTCCGGATTAATTAAATTAATAGAGAAGGTAAGGTCCCTGGGCTCTTACGGTT a S K G K N N A * I L N E S R S S R P N * F N Y L F H S R D P R M P I - b A R G K I M P K F * T K V E V Q G L I N L I I S S I P G T R E C Q - c Q G E K * C L N S K R K * K F K A * L I * L S L P F Q G P E N A N - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d F C P S F Y H R F E L R F Y F N L A * N I * N D R G N W P G S F A L - e A L P F I I G L N * V F T S T * P R I L K I I E E M G P V R S H W - f L L P F F L A * I R F S L L L E L G L * N L * R K W E L S G L I G - EagI NotI BglI| BspMI|| SmaI ||| HindIII SspI SrfI |||BsrBI EcoRI BstXI EagI SpeI BamHI SacI KpnI | | | ||| | | | | | | | | | TATTAGCACGAATCGTACCTGCCCGGGCGGCCGCTCGAAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ATAATCGTGCTTAGCATGGACGGGCCCGCCGGCGAGCTTTCGGCTTAAGGTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACC a L A R I V P A R A A A R K P N S S T L A A V T S G S E L G T K L G - b Y * H E S Y L P G R P L E S R I P A H W R P L L V D P S S V P S L A - c I S T N R T C P G G R S K A E F Q H T G G R Y * W I R A R Y Q A W - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d I L V F R V Q G P P R E F A S N W C V P P R * * H I R A R Y W A Q - e Y * C S D Y R G P R G S S L R I G A C Q R G N S T S G L E T G L K - f I N A R I T G A R A A A R F G F E L V S A A T V L P D S S P V L S P - BsrBI | CGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCATTAGTACCAGTATCGACAAAGGACACACTTTAACAATAGGCGAGTGTTAAGGTGTGTTGTATGCTCGGCCTTCGTATTTCACATTTCGGACCCCACG a V I M V I A V S C V K L L S A H N S T Q H T S R K H K V * S L G C - b * S W S * L F P V * N C Y P L T I P H N I R A G S I K C K A W G A - c R N H G H S C F L C E I V I R S Q F H T T Y E P E A * S V K P G V P - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d R L * P * L Q K R H S I T I R E C N W V V Y S G S A Y L T F G P T - e A Y D H D Y S N G T H F Q * G S V I G C L M R A P L M F H L A Q P A - f T I M T M A T E Q T F N N D A * L E V C C V L R F C L T Y L R P H - VspI PvuII VspI | | | CTAATGAGTGAGCTAACTGACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GATTACTCACTCGATTGACTGTAATTAACGCAACGCGAGTGACGGGCGAAAGGTCAGCCCTTTGGACAGCACGGTCGACGTAATTACTTAGCCGGTTGCG a L M S E L T D I N C V A L T A R F P V G K P V V P A A L M N R P T R - b * * V S * L T L I A L R S L P A F Q S G N L S C Q L H * * I G Q R - c N E * A N * H * L R C A H C P L S S R E T C R A S C I N E S A N A - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d G L S H A L Q C * N R Q A * Q G S E L R S V Q R A L Q M L S D A L A - e * H T L * S V N I A N R E S G A K W D P F R D H W S C * H I P W R - f R I L S S V S M L Q T A S V A R K G T P F G T T G A A N I F R G V - BsaXI BsrBI | | GCGGGGAGAGGCGGTCTGCGTATTGGGCGCTGTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCTGCGAGCGGTATCAGCTCACT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CGCCCCTCTCCGCCAGACGCATAACCCGCGACAAGGCGAAGGAGCGAGTGACTGAGCGACGCGAGCCAGCAAGCCGACGACGCTCGCCATAGTCGAGTGA a G E R R S A Y W A L F R F L A H * L A A L G R S A A A S G I S S L - b A G R G G L R I G R C S A S S L T D S L R S V V R L L R A V S A H S - c R G E A V C V L G A V P L P R S L T R C A R S F G C C E R Y Q L T - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d R P S A T Q T N P A T G S G R E S V R Q A R D N P Q Q S R Y * S V - e A P L P P R R I P R Q E A E E S V S E S R E T T R S S R A T D A * - f R P S L R D A Y Q A S N R K R A * Q S A A S P R E A A A L P I L E S - Bst1107I AceIII | BspLU11I Bpu10I | | | | CAGAGGCGGGTATACGGTTATTCACAGAATCAGGGGATGACGCCAGGAAAGAACATGTTGAGCAANAGGCCANNCAAATGCTCAGGAACCGTAAA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+----- 895 GTCTCCGCCCATATGCCAATAAGTGTCTTAGTCCCCTACTGCGGTCCTTTCTTGTACAACTCGTTNTCCGGTNNGTTTACGAGTCCTTGGCATTT a R G G Y T V I H R I R G * R Q E R T C * A ? G ? ? N A Q E P * - b E A G I R L F T E S G D D A R K E H V E Q ? A ? Q M L R N R K - c Q R R V Y G Y S Q N Q G M T P G K N M L S ? R P ? K C S G T V - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+----- 895 d * L R T Y P * E C F * P I V G P F F M N L L L G ? L H E P V T F - e E S A P I R N N V S D P S S A L F S C T S C ? A ? ? I S L F R L - f L P P Y V T I * L I L P H R W S L V H Q A ? P W ? F A * S G Y - Enzymes that do cut: AceIII BamHI BglI Bpu10I Bpu1102I BsaBI BsaXI BsmI BspLU11I BspMI BsrBI Bst1107I BstXI EagI EarI EcoRI EcoRV HindIII KpnI NotI PstI PvuII SacI SalI SanDI SmaI SpeI SrfI SspI StuI VspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BclI BfiI BglII BplI BpmI BsaI BsbI BseRI BsgI BsiWI BsmBI BspEI BspGI BsrDI BsrGI BssHII BssSI BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III Eco57I EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI Sse8387I Sse8647I SwaI Tth111I XbaI XcmI XmnI