(Linear) MAP of: ./Fgr-S_1_B08_T7.seq check: 2102 from: 1 to: 852 Fgr-S_1_B08_T7 852 28 759 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EagI BspMI NotI EcoRV EagI | BglI BsrBI| BsaBI | EcoRI NotI | SmaI NspV ApaI XhoI || BstXI | | PstI| BsrBI| | SrfI | | | || | | | || || | | AGCAATTCGAATTGGGCCCTCTATATGCTGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTTCGAGCGGCCGCCCGGGCAGGTGGCG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 TCGTTAAGCTTAACCCGGGAGATATACGACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAAAGCTCGCCGGCGGGCCCGTCCACCGC a S N S N W A L Y M L L E R P P V * W I S A E F G F R A A A R A G G E - b A I R I G P S I C C S S G R Q C D G Y L Q N S A F E R P P G Q V A - c Q F E L G P L Y A A R A A A S V M D I C R I R L S S G R P G R W R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d A I R I P G E I H Q E L P R W H S P Y R C F E A K S R G G P C T A - e L E F Q A R * I S S S R G G T H H I D A S N P K R A A A R A P P - f C N S N P G R Y A A R A A A L T I S I Q L I R S E L P R G P L H R - AceIII Bsu36I SanDI | | | AGGGCCAGGATTGTCAATGCCGGTGGCGAGTGCCTTACCTTTGACCAGCTCGCGCTCCGTGCTCCGCTTGGACAGAACACGCTTCTCCTGAGGGGTCCCA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TCCCGGTCCTAACAGTTACGGCCACCGCTCACGGAATGGAAACTGGTCGAGCGCGAGGCACGAGGCGAACCTGTCTTGTGCGAAGAGGACTCCCCAGGGT a G Q D C Q C R W R V P Y L * P A R A P C S A W T E H A S P E G S Q - b R A R I V N A G G E C L T F D Q L A L R A P L G Q N T L L L R G P K - c G P G L S M P V A S A L P L T S S R S V L R L D R T R F S * G V P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d L A L I T L A P P S H R V K S W S A S R A G S P C F V S R R L P G - e S P W S Q * H R H R T G * R Q G A R A G H E A Q V S C A E G S P D W - f P G P N D I G T A L A K G K V L E R E T S R K S L V R K E Q P T G - BsrBI BglI BpmI NdeI BcgI | | | | | | AGAACGCCAGGGAGGCTGTTAGGCACTTTGGCAAGGCTCCAGGAGTGCCACACAGCCACACCAAGCCATATGTCCGCTCCAAGGGCAGGAAATTCGAGAA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TCTTGCGGTCCCTCCGACAATCCGTGAAACCGTTCCGAGGTCCTCACGGTGTGTCGGTGTGGTTCGGTATACAGGCGAGGTTCCCGTCCTTTAAGCTCTT a E R Q G G C * A L W Q G S R S A T Q P H Q A I C P L Q G Q E I R E - b N A R E A V R H F G K A P G V P H S H T K P Y V R S K G R K F E K - c R T P G R L L G T L A R L Q E C H T A T P S H M S A P R A G N S R R - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d L F A L S A T L C K P L A G P T G C L W V L G Y T R E L P L F N S F - e S R W P P Q * A S Q C P E L L A V C G C W A M H G S W P C S I R S - f L V G P L S N P V K A L S W S H W V A V G L W I D A G L A P F E L - BcgI | GGCAAGAGGAAGGAGGAACAGCAGGGGCTTCAAGGTTTAAGCCGTGGAGTTTTCGGCACCCTTGTCACATTTGCTGTTATCGGTCAATCTTCACTTTTTT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CCGTTCTCCTTCCTCCTTGTCGTCCCCGAAGTTCCAAATTCGGCACCTCAAAAGCCGTGGGAACAGTGTAAACGACAATAGCCAGTTAGAAGTGAAAAAA a G K R K E E Q Q G L Q G L S R G V F G T L V T F A V I G Q S S L F W - b A R G R R N S R G F K V * A V E F S A P L S H L L L S V N L H F F - c Q E E G G T A G A S R F K P W S F R H P C H I C C Y R S I F T F L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d A L P L L F L L P K L T * A T S N E A G K D C K S N D T L R * K K - e P L L F S S C C P S * P K L R P T K P V R T V N A T I P * D E S K - f L C S S P P V A P A E L N L G H L K R C G Q * M Q Q * R D I K V K K - EagI HindIII KpnI | Bpu1102I EcoRI BstXI EagI SpeI BamHI SacI KpnI | | | | | | | | | | | | GGGTACCTCGGCCGCGACCACGCTAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGCGTAATCATGGTCA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CCCATGGAGCCGGCGCTGGTGCGATTCGGCTTAAGGTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACCGCATTAGTACCAGT a V P R P R P R * A E F Q H T G G R Y * W I R A R Y Q A W R N H G H - b G Y L G R D H A K P N S S T L A A V T S G S E L G T K L G V I M V I - c G T S A A T T L S R I P A H W R P L L V D P S S V P S L A * S W S - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P Y R P R S W A L G F E L V S A A T V L P D S S P V L S P T I M T - e Q T G R G R G R * A S N W C V P P R * * H I R A R Y W A Q R L * P * - f P V E A A V V S L R I G A C Q R G N S T S G L E T G L K A Y D H D - BsrBI | TAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 ATCGACAAAGGACACACTTTAACAATAGGCGAGTGTTAAGGTGTGTTGTATGCTCGGCCTTCGTATTTCACATTTCGGACCCCACGGATTACTCACTCGA a S C F L C E I V I R S Q F H T T Y E P E A * S V K P G V P N E * A - b A V S C V K L L S A H N S T Q H T S R K H K V * S L G C L M S E L - c * L F P V * N C Y P L T I P H N I R A G S I K C K A W G A * * V S * - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d M A T E Q T F N N D A * L E V C C V L R F C L T Y L R P H R I L S S - e L Q K R H S I T I R E C N W V V Y S G S A Y L T F G P T G L S H A - f Y S N G T H F Q * G S V I G C L M R A P L M F H L A Q P A * H T L - VspI PvuII VspI BsaXI | | | | AACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TTGAGTGTAATTAACGCAACGCGAGTGACGGGCGAAAGGTCAGCCCTTTGGACAGCACGGTCGACGTAATTACTTAGCCGGTTGCGCGCCCCTCTCCGCC a N S H * L R C A H C P L S S R E T C R A S C I N E S A N A R G E A V - b T H I N C V A L T A R F P V G K P V V P A A L M N R P T R G E R R - c L T L I A L R S L P A F Q S G N L S C Q L H * * I G Q R A G R G G - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d V * M L Q T A S V A R K G T P F G T T G A A N I F R G V R P S L R - e L E C * N R Q A * Q G S E L R S V Q R A L Q M L S D A L A R P S A - f * S V N I A N R E S G A K W D P F R D H W S C * H I P W R A P L P P - EarI SapI BsrBI AceIII | | | TTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AAACGCATAACCCGCGAGAAGGCGAAGGAGCGAGTGACTGAGCGACGCGAGCCAGCAAGCCGACGCCGCTCGCCATAGTCGAGTGAGTTTCCGCCATTAT a C V L G A L P L P R S L T R C A R S F G C G E R Y Q L T Q R R * Y - b F A Y W A L F R F L A H * L A A L G R S A A A S G I S S L K G G N T - c L R I G R S S A S S L T D S L R S V V R L R R A V S A H S K A V I - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d N A Y Q A S K R K R A * Q S A A S P R E A A A L P I L E S L P P L - e T Q T N P A R G S G R E S V R Q A R D N P Q P S R Y * S V * L R Y Y - f K R I P R E E A E E S V S E S R E T T R S R R A T D A * E F A T I - BspLU11I | CGGTTATCCACAGAATCAGGGGATAACGCNAGAAAGAACATGTGAGCANAAG 801 ---------+---------+---------+---------+---------+-- 852 GCCAATAGGTGTCTTAGTCCCCTATTGCGNTCTTTCTTGTACACTCGTNTTC a G Y P Q N Q G I T ? E R T C E ? K - b V I H R I R G * R ? K E H V S ? - c R L S T E S G D N A R K N M * A ? - 801 ---------+---------+---------+---------+---------+-- 852 d V T I W L I L P Y R ? F S C T L ? L - e P * G C F * P I V ? S L V H S C ? - f R N D V S D P S L A L F F M H A ? - Enzymes that do cut: AceIII ApaI BamHI BcgI BglI BpmI Bpu1102I BsaBI BsaXI BspLU11I BspMI BsrBI BstXI Bsu36I EagI EarI EcoRI EcoRV HindIII KpnI NdeI NotI NspV PstI PvuII SacI SanDI SapI SmaI SpeI SrfI VspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BbsI Bce83I BclI BfiI BglII BplI Bpu10I BsaI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BsrDI BsrGI BssHII BssSI Bst1107I BstEII ClaI DraI DraIII DrdI DrdII EciI Eco47III Eco57I EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NgoAIV NheI NruI NsiI PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SalI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI Sse8387I Sse8647I SspI StuI SwaI Tth111I XbaI XcmI XmnI