(Linear) MAP of: ./Fgr-S_1_C02_T7.seq check: 9412 from: 1 to: 892 Fgr-S_1_C02_T7 892 28 638 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. XhoI EagI EcoRV SphI| NotI BsaBI | EcoRI SanDI NsiI ||BsrBI| BstXI | | PstI|Bpu1102I EagI | | || || | | | || | | NGGAATCGAATTGGGACCCTCTAAATGCATGCTCGAGCGGCCGCCAATGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACTAT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 NCCTTAGCTTAACCCTGGGAGATTTACGTACGAGCTCGCCGGCGGTTACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGATA a ? N R I G T L * M H A R A A A N V M D I C R I R L S V V A A E V L * - b G I E L G P S K C M L E R P P M * W I S A E F G L A W S R P R Y Y - c E S N W D P L N A C S S G R Q C D G Y L Q N S A * R G R G R G T I - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d S D F Q S G R F A H E L P R W H S P Y R C F E A * R P R P R P V I - e P I S N P G E L H M S S R G G I H H I D A S N P K A H D R G L Y * - f F R I P V R * I C A R A A A L T I S I Q L I R S L T T A A S T S - PinAI DraI | | AAAAACCTCTATTATGAAGATAGAAACCAACCTGGCTCACACCGGTCTTAACTCAAATCATGTAAGAATTTAAAGGTCGAACAGACCTATAATCTAATTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TTTTTGGAGATAATACTTCTATCTTTGGTTGGACCGAGTGTGGCCAGAATTGAGTTTAGTACATTCTTAAATTTCCAGCTTGTCTGGATATTAGATTAAA a K P L L * R * K P T W L T P V L T Q I M * E F K G R T D L * S N F - b K N L Y Y E D R N Q P G S H R S * L K S C K N L K V E Q T Y N L I F - c K T S I M K I E T N L A H T G L N S N H V R I * R S N R P I I * F - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d F V E I I F I S V L R A * V P R L E F * T L I * L D F L G I I * N - e L F R * * S S L F W G P E C R D * S L D H L F K F T S C V * L R I - f Y F G R N H L Y F G V Q S V G T K V * I M Y S N L P R V S R Y D L K - Bsu36I | TCTTCTATTAGATGTTTTCTTAATTCAACATCGAGGTAGCATTTAATCTTCTTGATTTGATCTCTAAAAAATTTTTGCTCTGTTATCCCTAAGGTAACTT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGAAGATAATCTACAAAAGAATTAAGTTGTAGCTCCATCGTAAATTAGAAGAACTAAACTAGAGATTTTTTAAAAACGAGACAATAGGGATTCCATTGAA a L L L D V F L I Q H R G S I * S S * F D L * K I F A L L S L R * L - b F Y * M F S * F N I E V A F N L L D L I S K K F L L C Y P * G N F - c S S I R C F L N S T S R * H L I F L I * S L K N F C S V I P K V T F - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d E E I L H K R L E V D L Y C K I K K I Q D R F F K Q E T I G L T V - e K K * * I N E * N L M S T A N L R R S K I E L F N K S Q * G * P L K - f R R N S T K K I * C R P L M * D E Q N S R * F I K A R N D R L Y S - BfiI DraI | | TTTTTTCTTAAAAGGTTTATTATTCTTTTAATAGTAATTTTAATAAAAAATTTTTATTTTTTTACTTCCCCAGTAAAATTTTTACCTTTTAATTTTTAAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AAAAAAGAATTTTCCAAATAATAAGAAAATTATCATTAAAATTATTTTTTAAAAATAAAAAAATGAAGGGGTCATTTTAAAAATGGAAAATTAAAAATTT a F F L K R F I I L L I V I L I K N F Y F F T S P V K F L P F N F * I - b F F L K G L L F F * * * F * * K I F I F L L P Q * N F Y L L I F K - c F S * K V Y Y S F N S N F N K K F L F F Y F P S K I F T F * F L N - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d K K E * F T * * E K L L L K L L F N K N K * K G L L I K V K * N K F - e K K K F P K N N K * Y Y N * Y F I K I K K S G W Y F K * R K I K L - f K K R L L N I I R K I T I K I F F K * K K V E G T F N K G K L K * - EagI NotI BglI| BspMI|| SmaI ||| SrfI |||BsrBI EcoRI BstXI | ||| | | | TTTATAATTAAGTTCTATAGGGTCTTATCGTCTTTCATAATTATTTTAGCCTTTTAACACCTGCCCGGGCGGCCGCTCGAAAGCCGAATTCCAGCACACT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AAATATTAATTCAAGATATCCCAGAATAGCAGAAAGTATTAATAAAATCGGAAAATTGTGGACGGGCCCGCCGGCGAGCTTTCGGCTTAAGGTCGTGTGA a Y N * V L * G L I V F H N Y F S L L T P A R A A A R K P N S S T L - b F I I K F Y R V L S S F I I I L A F * H L P G R P L E S R I P A H W - c L * L S S I G S Y R L S * L F * P F N T C P G G R S K A E F Q H T - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d K Y N L E I P D * R R E Y N N * G K L V Q G P P R E F A S N W C V - e N I I L N * L T K D D K M I I K A K * C R G P R G S S L R I G A C - f I * L * T R Y P R I T K * L * K L R K V G A R A A A R F G F E L V S - HindIII EagI SpeI BamHI SacI KpnI | BsrBI | | | | | | | GGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACCGCATTAGTACCAGTATCGACAAAGGACACACTTTAACAATAGGCGAGTGTTAAGGTGT a A A V T S G S E L G T K L G V I M V I A V S C V K L L S A H N S T - b R P L L V D P S S V P S L A * S W S * L F P V * N C Y P L T I P H - c G G R Y * W I R A R Y Q A W R N H G H S C F L C E I V I R S Q F H T - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d P P R * * H I R A R Y W A Q R L * P * L Q K R H S I T I R E C N W - e Q R G N S T S G L E T G L K A Y D H D Y S N G T H F Q * G S V I G C - f A A T V L P D S S P V L S P T I M T M A T E Q T F N N D A * L E V - VspI | CAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GTTGTATGCTCGGCCTTCGTATTTCACATTTCGGACCCCACGGATTACTCACTCGATTGAGTGTAATTAACGCAACGCGAGTGACGGGCGAAAGGTCAGC a Q H T S R K H K V * S L G C L M S E L T H I N C V A L T A R F P V G - b N I R A G S I K C K A W G A * * V S * L T L I A L R S L P A F Q S - c T Y E P E A * S V K P G V P N E * A N S H * L R C A H C P L S S R - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d V V Y S G S A Y L T F G P T G L S H A L E C * N R Q A * Q G S E L R - e L M R A P L M F H L A Q P A * H T L * S V N I A N R E S G A K W D - f C C V L R F C L T Y L R P H R I L S S V * M L Q T A S V A R K G T - PvuII VspI BsaXI | | | GGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAAGCGGTTTTGCGTATTGGGCGCTCTTTCGCTTTCTCGCTCACTGACTCG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CCTTTGGACAGCACGGTCGACGTAATTACTTAGCCGGTTGCGCGCCCCTCTTCGCCAAAACGCATAACCCGCGAGAAAGCGAAAGAGCGAGTGACTGAGC a K P V V P A A L M N R P T R G E K R F C V L G A L S L S R S L T R - b G N L S C Q L H * * I G Q R A G R S G F A Y W A L F R F L A H * L A - c E T C R A S C I N E S A N A R G E A V L R I G R S F A F S L T D S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d S V Q R A L Q M L S D A L A R P S A T K R I P R E K A K E S V S E - e P F R D H W S C * H I P W R A P L L P K A Y Q A S K R K R A * Q S - f P F G T T G A A N I F R G V R P S F R N Q T N P A R E S E R E S V R - BsrBI AceIII | | CTGCGCTTGGGTCGTTCGGCTGCGGCGAGCGGGATCAGCTCACTCAAAGGACGGAATACGGTTATCCACCAGATCAGGGAATAACCCAGAAA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+-- 892 GACGCGAACCCAGCAAGCCGACGCCGCTCGCCCTAGTCGAGTGAGTTTCCTGCCTTATGCCAATAGGTGGTCTAGTCCCTTATTGGGTCTTT a C A W V V R L R R A G S A H S K D G I R L S T R S G N N P E - b A L G S F G C G E R D Q L T Q R T E Y G Y P P D Q G I T Q K - c L R L G R S A A A S G I S S L K G R N T V I H Q I R E * P R - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+-- 892 d S R K P R E A A A L P I L E S L P R F V T I W W I L S Y G L F - e A A S P D N P Q P S R S * S V * L V S Y P * G G S * P I V W F - f Q A Q T T R S R R A P D A * E F S P I R N D V L D P F L G S - Enzymes that do cut: AceIII BamHI BfiI BglI Bpu1102I BsaBI BsaXI BspMI BsrBI BstXI Bsu36I DraI EagI EcoRI EcoRV HindIII KpnI NotI NsiI PinAI PstI PvuII SacI SanDI SmaI SpeI SphI SrfI VspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BclI BglII BplI BpmI Bpu10I BsaI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrDI BsrGI BssHII BssSI Bst1107I BstEII ClaI DraIII DrdI DrdII EarI EciI Eco47III Eco57I EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NspV PacI Pfl1108I PflMI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SalI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI Sse8387I Sse8647I SspI StuI SwaI Tth111I XbaI XcmI XmnI