(Linear) MAP of: ./Fgr-S_1_C03_T7.seq check: 7979 from: 1 to: 895 Fgr-S_1_C03_T7 895 25 567 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EagI NotI EcoRV BsrBI| BsaBI | EcoRI ApaI XhoI || BstXI | | PstI|Bpu1102I EagI KpnI | | || | | | || | | | GGATTGGATTGGGCCCTCTANATGCTGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACCCTTGTT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCTAACCTAACCCGGGAGATNTACGACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGGGAACAA a G L D W A L ? M L L E R P P V * W I S A E F G L A W S R P R Y P C C - b D W I G P S ? C C S S G R Q C D G Y L Q N S A * R G R G R G T L V - c I G L G P L ? A A R A A A S V M D I C R I R L S V V A A E V P L L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d I P N P G R ? A A R A A A L T I S I Q L I R S L T T A A S T G K N - e S Q I P G E ? H Q E L P R W H S P Y R C F E A * R P R P R P V R T - f N S Q A R * ? S S S R G G T H H I D A S N P K A H D R G L Y G Q - GCCCTTGTCCTGGTTGTTGCACTTGTCCTATTTGTTGGCCTTGTCCTGGTTGTTGCGCTTGTCCTGACTGCTGCGGGGACGTTGGGCAGTGCCCTTGTTG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGGGAACAGGACCAACAACGTGAACAGGATAAACAACCGGAACAGGACCAACAACGCGAACAGGACTGACGACGCCCCTGCAACCCGTCACGGGAACAAC a P C P G C C T C P I C W P C P G C C A C P D C C G D V G Q C P C C - b A L V L V V A L V L F V G L V L V V A L V L T A A G T L G S A L V A - c P L S W L L H L S Y L L A L S W L L R L S * L L R G R W A V P L L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d G K D Q N N C K D * K N A K D Q N N R K D Q S S R P R Q A T G K N - e A R T R T T A S T R N T P R T R T T A S T R V A A P V N P L A R T - f Q G Q G P Q Q V Q G I Q Q G Q G P Q Q A Q G S Q Q P S T P C H G Q Q - CCCTTGTCCTGGTTGTTGCCCTTGTCCTGGCTGCTGCGGAGAAGTTGGGTAGTACCCTTGTTGCCCTTGTCCTAGTTGTTGCCCTTGTCCTGGCTGCTGT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GGGAACAGGACCAACAACGGGAACAGGACCGACGACGCCTCTTCAACCCATCATGGGAACAACGGGAACAGGATCAACAACGGGAACAGGACCGACGACA a P C P G C C P C P G C C G E V G * Y P C C P C P S C C P C P G C C - b L V L V V A L V L A A A E K L G S T L V A L V L V V A L V L A A V - c P L S W L L P L S W L L R R S W V V P L L P L S * L L P L S W L L W - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G K D Q N N G K D Q S S R L L Q T T G K N G K D * N N G K D Q S S - e A R T R T T A R T R A A A S F N P L V R T A R T R T T A R T R A A T - f G Q G P Q Q G Q G P Q Q P S T P Y Y G Q Q G Q G L Q Q G Q G P Q Q - EagI NotI BglI| BspMI|| SmaI ||| HindIII SrfI |||BsrBI EcoRI BstXI EagI SpeI BamHI SacI KpnI | | ||| | | | | | | | | | GGAGAAGTTGGATAGTACCTGCCCGGGCGGCCGCTCGAAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CCTCTTCAACCTATCATGGACGGGCCCGCCGGCGAGCTTTCGGCTTAAGGTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACC a G E V G * Y L P G R P L E S R I P A H W R P L L V D P S S V P S L A - b E K L D S T C P G G R S K A E F Q H T G G R Y * W I R A R Y Q A W - c R S W I V P A R A A A R K P N S S T L A A V T S G S E L G T K L G - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d H L L Q I T G A R A A A R F G F E L V S A A T V L P D S S P V L S P - e S F N S L V Q G P P R E F A S N W C V P P R * * H I R A R Y W A Q - f P S T P Y Y R G P R G S S L R I G A C Q R G N S T S G L E T G L K - BsrBI | CGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GCATTAGTACCAGTATCGACAAAGGACACACTTTAACAATAGGCGAGTGTTAAGGTGTGTTGTATGCTCGGCCTTCGTATTTCACATTTCGGACCCCACG a * S W S * L F P V * N C Y P L T I P H N I R A G S I K C K A W G A - b R N H G H S C F L C E I V I R S Q F H T T Y E P E A * S V K P G V P - c V I M V I A V S C V K L L S A H N S T Q H T S R K H K V * S L G C - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d T I M T M A T E Q T F N N D A * L E V C C V L R F C L T Y L R P H - e R L * P * L Q K R H S I T I R E C N W V V Y S G S A Y L T F G P T - f A Y D H D Y S N G T H F Q * G S V I G C L M R A P L M F H L A Q P A - VspI PvuII VspI | | | CTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GATTACTCACTCGATTGAGTGTAATTAACGCAACGCGAGTGACGGGCGAAAGGTCAGCCCTTTGGACAGCACGGTCGACGTAATTACTTAGCCGGTTGCG a * * V S * L T L I A L R S L P A F Q S G N L S C Q L H * * I G Q R - b N E * A N S H * L R C A H C P L S S R E T C R A S C I N E S A N A - c L M S E L T H I N C V A L T A R F P V G K P V V P A A L M N R P T R - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d R I L S S V * M L Q T A S V A R K G T P F G T T G A A N I F R G V - e G L S H A L E C * N R Q A * Q G S E L R S V Q R A L Q M L S D A L A - f * H T L * S V N I A N R E S G A K W D P F R D H W S C * H I P W R - EarI SapI BsrBI | | GCGGNGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCNGCGAGCGGTATCAGCTCACT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CGCCNCTCTCCGCCAAACGCATAACCCGCGAGAAGGCGAAGGAGCGAGTGACTGAGCGACGCGAGCCAGCAAGCCGACGNCGCTCGCCATAGTCGAGTGA a A ? R G G L R I G R S S A S S L T D S L R S V V R L ? R A V S A H S - b R ? E A V C V L G A L P L P R S L T R C A R S F G C ? E R Y Q L T - c G E R R F A Y W A L F R F L A H * L A A L G R S A A A S G I S S L - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R P S L R N A Y Q A S K R K R A * Q S A A S P R E A A A L P I L E S - e R ? S A T Q T N P A R G S G R E S V R Q A R D N P Q ? S R Y * S V - f A ? L P P K R I P R E E A E E S V S E S R E T T R S ? R A T D A * - AceIII BspLU11I | | CAAAAGCGGTAATACGGTTATCCACAGAATCAGGGGCATACGCAGGAAAGACATGTGAGCANAAGGCCAGCAAAGGCCAGGAACCGTAAAAAGGCCGCGT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GTTTTCGCCATTATGCCAATAGGTGTCTTAGTCCCCGTATGCGTCCTTTCTGTACACTCGTNTTCCGGTCGTTTCCGGTCCTTGGCATTTTTCCGGCGCA a K A V I R L S T E S G A Y A G K T C E ? K A S K G Q E P * K G R V - b Q K R * Y G Y P Q N Q G H T Q E R H V S ? R P A K A R N R K K A A L - c K S G N T V I H R I R G I R R K D M * A ? G Q Q R P G T V K R P R - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d L L P L V T I W L I L P M R L F S M H A ? P W C L G P V T F L G R - e * F R Y Y P * G C F * P C V C S L C T L ? L G A F A L F R L F A A - f E F A T I R N D V S D P A Y A P F V H S C ? A L L P W S G Y F P R T - Eco57I | TGCTTGCCGTTTTTCCATAGGCTCCGGCCCCCTGTACGAGCATTACAAAAATCGACGCTTCAGTTCAGAGGGGCCAAAACCCCGACGGACTATAT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+----- 895 ACGAACGGCAAAAAGGTATCCGAGGCCGGGGGACATGCTCGTAATGTTTTTAGCTGCGAAGTCAAGTCTCCCCGGTTTTGGGGCTGCCTGATATA a A C R F S I G S G P L Y E H Y K N R R F S S E G P K P R R T I - b L A V F P * A P A P C T S I T K I D A S V Q R G Q N P D G L Y - c C L P F F H R L R P P V R A L Q K S T L Q F R G A K T P T D Y - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+----- 895 d Q K G N K W L S R G G T R A N C F D V S * N L P A L V G V S * I - e N S A T K G Y A G A G Q V L M V F I S A E T * L P W F G S P S Y - f A Q R K E M P E P G R Y S C * L F R R K L E S P G F G R R V I - Enzymes that do cut: AceIII ApaI BamHI BglI Bpu1102I BsaBI BspLU11I BspMI BsrBI BstXI EagI EarI Eco57I EcoRI EcoRV HindIII KpnI NotI PstI PvuII SacI SapI SmaI SpeI SrfI VspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BclI BfiI BglII BplI BpmI Bpu10I BsaI BsaXI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BsrDI BsrGI BssHII BssSI Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SalI SanDI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI Sse8387I Sse8647I SspI StuI SwaI Tth111I XbaI XcmI XmnI