(Linear) MAP of: ./Fgr-S_1_C05_T7.seq check: 1743 from: 1 to: 880 Fgr-S_1_C05_T7 880 26 682 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EagI EcoRV XhoI NotI BsaBI | EcoRI ApaI SphI|BsrBI| BstXI | | PstI|Bpu1102I EagI NcoI | || || | | | || | | | GGATCTGTATGGGCCCTCTAGTGCATGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACATTACCA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCTAGACATACCCGGGAGATCACGTACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGTAATGGT a G S V W A L * C M L E R P P V * W I S A E F G L A W S R P R Y I T M - b D L Y G P S S A C S S G R Q C D G Y L Q N S A * R G R G R G T L P - c I C M G P L V H A R A A A S V M D I C R I R L S V V A A E V H Y H - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d I Q I P G R T C A R A A A L T I S I Q L I R S L T T A A S T C * W - e S R Y P G E L A H E L P R W H S P Y R C F E A * R P R P R P V N G - f D T H A R * H M S S R G G T H H I D A S N P K A H D R G L Y M V - EcoNI | TGGCAGTTCAGGGGAAATGCAGAGAACAAGCCATTTCAGGCTTACACGCGCATACGCATCATAGACTACATATATGAAACGGCCTTTGTTAGGCAGCAGA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ACCGTCAAGTCCCCTTTACGTCTCTTGTTCGGTAAAGTCCGAATGTGCGCGTATGCGTAGTATCTGATGTATATACTTTGCCGGAAACAATCCGTCGTCT a A V Q G K C R E Q A I S G L H A H T H H R L H I * N G L C * A A E - b W Q F R G N A E N K P F Q A Y T R I R I I D Y I Y E T A F V R Q Q S - c G S S G E M Q R T S H F R L T R A Y A S * T T Y M K R P L L G S R - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d P L E P S I C L V L W K L S V R A Y A D Y V V Y I F R G K N P L L - e H C N L P F A S F L G N * A * V R M R M M S * M Y S V A K T L C C - f M A T * P F H L S C A M E P K C A C V C * L S C I H F P R Q * A A S - NcoI BspMI Sse8647I | | | GTTTCCACAAGTCCATGGCTATGTCTTATTTATCTTCACCAGATGCACCAACAGCAGGTTATCCGGTTGACGAGGCAGCGTCCTCAGACAAGGACCTGGG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CAAAGGTGTTCAGGTACCGATACAGAATAAATAGAAGTGGTCTACGTGGTTGTCGTCCAATAGGCCAACTGCTCCGTCGCAGGAGTCTGTTCCTGGACCC a F P Q V H G Y V L F I F T R C T N S R L S G * R G S V L R Q G P G - b F H K S M A M S Y L S S P D A P T A G Y P V D E A A S S D K D L G - c V S T S P W L C L I Y L H Q M H Q Q Q V I R L T R Q R P Q T R T W A - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d T E V L G H S H R I * R * W I C W C C T I R N V L C R G * V L V Q - e L K W L D M A I D * K D E G S A G V A P * G T S S A A D E S L S R P - f N G C T W P * T K N I K V L H V L L L N D P Q R P L T R L C P G P - EagI NotI BglI| BspMI|| NheI SmaI ||| HindIII PstI| SrfI |||BsrBI EcoRI BstXI EagI SpeI BamHI SacI KpnI | || | ||| | | | | | | | | | CTGCAGCTAGCCTAGCAATCACCTGCCCGGGCGGCCGCTCGAAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GACGTCGATCGGATCGTTAGTGGACGGGCCCGCCGGCGAGCTTTCGGCTTAAGGTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCG a L Q L A * Q S P A R A A A R K P N S S T L A A V T S G S E L G T K L - b C S * P S N H L P G R P L E S R I P A H W R P L L V D P S S V P S - c A A S L A I T C P G G R S K A E F Q H T G G R Y * W I R A R Y Q A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d A A A L R A I V Q G P P R E F A S N W C V P P R * * H I R A R Y W A - e Q L * G L L * R G P R G S S L R I G A C Q R G N S T S G L E T G L - f S C S A * C D G A R A A A R F G F E L V S A A T V L P D S S P V L - BsrBI | TTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AACCGCATTAGTACCAGTATCGACAAAGGACACACTTTAACAATAGGCGAGTGTTAAGGTGTGTTGTATGCTCGGCCTTCGTATTTCACATTTCGGACCC a G V I M V I A V S C V K L L S A H N S T Q H T S R K H K V * S L G - b L A * S W S * L F P V * N C Y P L T I P H N I R A G S I K C K A W G - c W R N H G H S C F L C E I V I R S Q F H T T Y E P E A * S V K P G - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d Q R L * P * L Q K R H S I T I R E C N W V V Y S G S A Y L T F G P - e K A Y D H D Y S N G T H F Q * G S V I G C L M R A P L M F H L A Q - f S P T I M T M A T E Q T F N N D A * L E V C C V L R F C L T Y L R P - VspI PvuII VspI | | | GTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CACGGATTACTCACTCGATTGAGTGTAATTAACGCAACGCGAGTGACGGGCGAAAGGTCAGCCCTTTGGACAGCACGGTCGACGTAATTACTTAGCCGGT a C L M S E L T H I N C V A L T A R F P V G K P V V P A A L M N R P - b A * * V S * L T L I A L R S L P A F Q S G N L S C Q L H * * I G Q - c V P N E * A N S H * L R C A H C P L S S R E T C R A S C I N E S A N - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d T G L S H A L E C * N R Q A * Q G S E L R S V Q R A L Q M L S D A - e P A * H T L * S V N I A N R E S G A K W D P F R D H W S C * H I P W - f H R I L S S V * M L Q T A S V A R K G T P F G T T G A A N I F R G - EarI BsaXI SapI BsrBI | | | ACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TGCGCGCCCCTCTCCGCCAAACGCATAACCCGCGAGAAGGCGAAGGAGCGAGTGACTGAGCGACGCGAGCCAGCAAGCCGACGCCGCTCGCCATAGTCGA a T R G E R R F A Y W A L F R F L A H * L A A L G R S A A A S G I S S - b R A G R G G L R I G R S S A S S L T D S L R S V V R L R R A V S A - c A R G E A V C V L G A L P L P R S L T R C A R S F G C G E R Y Q L - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d L A R P S A T Q T N P A R G S G R E S V R Q A R D N P Q P S R Y * S - e R A P L P P K R I P R E E A E E S V S E S R E T T R S R R A T D A - f V R P S L R N A Y Q A S K R K R A * Q S A A S P R E A A A L P I L - AceIII BspLU11I | | CACTCAAAGGCGGTAATACGGTTATCCACAGGATCAGGGGATAACGCACGAAAGAACATGTGAGCAAAAGCCAGCAAAGGCCAGGAACCGTAAAAGGCCG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GTGAGTTTCCGCCATTATGCCAATAGGTGTCCTAGTCCCCTATTGCGTGCTTTCTTGTACACTCGTTTTCGGTCGTTTCCGGTCCTTGGCATTTTCCGGC a L K G G N T V I H R I R G * R T K E H V S K S Q Q R P G T V K G R - b H S K A V I R L S T G S G D N A R K N M * A K A S K G Q E P * K A A - c T Q R R * Y G Y P Q D Q G I T H E R T C E Q K P A K A R N R K R P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d V * L R Y Y P * G C S * P I V C S L V H S C F G A F A L F R L L G - e * E F A T I R N D V P D P S L A R F F M H A F A L L P W S G Y F A - f E S L P P L V T I W L I L P Y R V F S C T L L L W C L G P V T F P R - EciI | CGTGCTGGCGTTTTTCGATAGCTCCGCCCCCTGACAGCATCACAAATCGCGCTCAGTCAGAGGTGCGAACCCGACAGACT 801 ---------+---------+---------+---------+---------+---------+---------+---------+ 880 GCACGACCGCAAAAAGCTATCGAGGCGGGGGACTGTCGTAGTGTTTAGCGCGAGTCAGTCTCCACGCTTGGGCTGTCTGA a V L A F F D S S A P * Q H H K S R S V R G A N P T D - b C W R F S I A P P P D S I T N R A Q S E V R T R Q T - c R A G V F R * L R P L T A S Q I A L S Q R C E P D R - 801 ---------+---------+---------+---------+---------+---------+---------+---------+ 880 d R A P T K R Y S R G R V A D C I A S L * L H S G S L S - e A H Q R K E I A G G G S L M V F R A * D S T R V R C V - f T S A N K S L E A G Q C C * L D R E T L P A F G V S - Enzymes that do cut: AceIII ApaI BamHI BglI Bpu1102I BsaBI BsaXI BspLU11I BspMI BsrBI BstXI EagI EarI EciI EcoNI EcoRI EcoRV HindIII KpnI NcoI NheI NotI PstI PvuII SacI SapI SmaI SpeI SphI SrfI Sse8647I VspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BclI BfiI BglII BplI BpmI Bpu10I BsaI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BsrDI BsrGI BssHII BssSI Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdI DrdII Eco47III Eco57I FseI FspI HgiEII HpaI MfeI MluI MscI NarI NdeI NgoAIV NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SalI SanDI ScaI SexAI SfiI SgfI SgrAI SnaBI Sse8387I SspI StuI SwaI Tth111I XbaI XcmI XmnI