(Linear) MAP of: ./Fgr-S_3_G07_T7.seq check: 5366 from: 1 to: 859 Fgr-S_3_G07_T7 859 28 710 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:35 .. EagI NotI EcoRV XbaI BsrBI| BsaBI | EcoRI ApaI | XhoI || BstXI | | PstI|Bpu1102I EagI | | | || | | | || | | GAATTGGGCCCTCTAGATGCTGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTGTGTAAATTATATT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAACCCGGGAGATCTACGACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCACACATTTAATATAA a E L G P L D A A R A A A S V M D I C R I R L S V V A A E V C K L Y Y - b N W A L * M L L E R P P V * W I S A E F G L A W S R P R C V N Y I - c I G P S R C C S S G R Q C D G Y L Q N S A * R G R G R G V * I I L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d I P G E L H Q E L P R W H S P Y R C F E A * R P R P R P T Y I I N - e F Q A R * I S S S R G G T H H I D A S N P K A H D R G L H T F * I - f N P G R S A A R A A A L T I S I Q L I R S L T T A A S T H L N Y - EagI NotI BglI| BspMI|| SmaI ||| SrfI |||BsrBI EcoRI | ||| | | ATTTTGGTAGGATAGTAAGTCGCTTTTCTTTTCCTTTTTGGGGGACACTAATGTTGGTCATTTGTACCTGCCCGGGCGGCCGCTCGAAAGCCGAATTCCA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TAAAACCATCCTATCATTCAGCGAAAAGAAAAGGAAAAACCCCCTGTGATTACAACCAGTAAACATGGACGGGCCCGCCGGCGAGCTTTCGGCTTAAGGT a F G R I V S R F S F P F W G T L M L V I C T C P G G R S K A E F Q - b I L V G * * V A F L F L F G G H * C W S F V P A R A A A R K P N S S - c F W * D S K S L F F S F L G D T N V G H L Y L P G R P L E S R I P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d N Q Y S L L D S K K E K K P S V L T P * K Y R G P R G S S L R I G - e I K T P Y Y T A K R K R K P P C * H Q D N T G A R A A A R F G F E - f * K P L I T L R K E K G K Q P V S I N T M Q V Q G P P R E F A S N W - HindIII BstXI EagI SpeI BamHI SacI KpnI | BsrBI | | | | | | | | GCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACCGCATTAGTACCAGTATCGACAAAGGACACACTTTAACAATAGGCGAGTGTT a H T G G R Y * W I R A R Y Q A W R N H G H S C F L C E I V I R S Q - b T L A A V T S G S E L G T K L G V I M V I A V S C V K L L S A H N - c A H W R P L L V D P S S V P S L A * S W S * L F P V * N C Y P L T I - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d A C Q R G N S T S G L E T G L K A Y D H D Y S N G T H F Q * G S V - e L V S A A T V L P D S S P V L S P T I M T M A T E Q T F N N D A * L - f C V P P R * * H I R A R Y W A Q R L * P * L Q K R H S I T I R E C - VspI | TTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AAGGTGTGTTGTATGCTCGGCCTTCGTATTTCACATTTCGGACCCCACGGATTACTCACTCGATTGAGTGTAATTAACGCAACGCGAGTGACGGGCGAAA a F H T T Y E P E A * S V K P G V P N E * A N S H * L R C A H C P L S - b S T Q H T S R K H K V * S L G C L M S E L T H I N C V A L T A R F - c P H N I R A G S I K C K A W G A * * V S * L T L I A L R S L P A F - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d I G C L M R A P L M F H L A Q P A * H T L * S V N I A N R E S G A K - e E V C C V L R F C L T Y L R P H R I L S S V * M L Q T A S V A R K - f N W V V Y S G S A Y L T F G P T G L S H A L E C * N R Q A * Q G S - EarI PvuII VspI BsaXI SapI | | | | CCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGTCAGCCCTTTGGACAGCACGGTCGACGTAATTACTTAGCCGGTTGCGCGCCCCTCTCCGCCAAACGCATAACCCGCGAGAAGGCGAAGGAGCGAGTGA a S R E T C R A S C I N E S A N A R G E A V C V L G A L P L P R S L - b P V G K P V V P A A L M N R P T R G E R R F A Y W A L F R F L A H * - c Q S G N L S C Q L H * * I G Q R A G R G G L R I G R S S A S S L T - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d W D P F R D H W S C * H I P W R A P L P P K R I P R E E A E E S V - e G T P F G T T G A A N I F R G V R P S L R N A Y Q A S K R K R A * - f E L R S V Q R A L Q M L S D A L A R P S A T Q T N P A R G S G R E S - BsrBI AceIII | | GACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CTGAGCGACGCGAGCCAGCAAGCCGACGCCGCTCGCCATAGTCGAGTGAGTTTCCGCCATTATGCCAATAGGTGTCTTAGTCCCCTATTGCGTCCTTTCT a T R C A R S F G C G E R Y Q L T Q R R * Y G Y P Q N Q G I T Q E R - b L A A L G R S A A A S G I S S L K G G N T V I H R I R G * R R K E - c D S L R S V V R L R R A V S A H S K A V I R L S T E S G D N A G K N - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S E S R E T T R S R R A T D A * E F A T I R N D V S D P S L A P F - e Q S A A S P R E A A A L P I L E S L P P L V T I W L I L P Y R L F S - f V R Q A R D N P Q P S R Y * S V * L R Y Y P * G C F * P I V C S L - BspLU11I EciI Bce83I | | | ACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TGTACACTCGTTTTCCGGTCGTTTTCCGGTCCTTGGCATTTTTCCGGCGCAACGACCGCAAAAAGGTATCCGAGGCGGGGGGACTGCTCGTAGTGTTTTT a T C E Q K A S K R P G T V K R P R C W R F S I G S A P L T S I T K I - b H V S K R P A K G Q E P * K G R V A G V F P * A P P P * R A S Q K - c M * A K G Q Q K A R N R K K A A L L A F F H R L R P P D E H H K N - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d F M H A F P W C F A L F R L F A A N S A N K W L S R G G S S C * L F - e C T L L L G A F P W S G Y F P R T A P T K G Y A G G G Q R A D C F - f V H S C F A L L L G P V T F L G R Q Q R K E M P E A G R V L M V F - DrdI BssSI BpmI | | | TCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCCTGGAGCTNCCTCGTGCGCTCTNCTGTTCCGACCCTG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AGCTGCGAGTTCAGTCTCCACCGCTTTGGGCTGTCCTGATATTTCTATGGTCCGCAAAGGGGGGACCTCGANGGAGCACGCGAGANGACAAGGCTGGGAC a D A Q V R G G E T R Q D Y K D T R R F P P G A ? S C A L L F R P C - b S T L K S E V A K P D R T I K I P G V S P L E L P R A L ? C S D P A - c R R S S Q R W R N P T G L * R Y Q A F P P W S ? L V R S ? V P T L - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d R R E L * L H R F G V P S Y L Y W A N G G Q L ? R T R E ? T G V R - e D V S L D S T A F G S L V I F I G P T E G R S S G R A S ? Q E S G - f I S A * T L P P S V R C S * L S V L R K G G P A ? E H A R ? N R G Q - EciI | CCGCTTACCGNATACCTGTCCGCCTTTCTCCCTTTCGGAAAGCGTGGCGCTTTCTCATG 801 ---------+---------+---------+---------+---------+--------- 859 GGCGAATGGCNTATGGACAGGCGGAAAGAGGGAAAGCCTTTCGCACCGCGAAAGAGTAC a R L P ? T C P P F S L S E S V A L S H - b A Y R I P V R L S P F R K A W R F L M - c P L T ? Y L S A F L P F G K R G A F S - 801 ---------+---------+---------+---------+---------+--------- 859 d G S V ? Y R D A K R G K P F R P A K E H - e A A * R ? G T R R E G K R F A H R K R M - f R K G ? V Q G G K E R E S L T A S E * - Enzymes that do cut: AceIII ApaI BamHI Bce83I BglI BpmI Bpu1102I BsaBI BsaXI BspLU11I BspMI BsrBI BssSI BstXI DrdI EagI EarI EciI EcoRI EcoRV HindIII KpnI NotI PstI PvuII SacI SapI SmaI SpeI SrfI VspI XbaI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BbsI BcgI BclI BfiI BglII BplI Bpu10I BsaI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BsrDI BsrGI BssHII Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdII Eco47III Eco57I EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SalI SanDI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI Sse8387I Sse8647I SspI StuI SwaI Tth111I XcmI XmnI