(Linear) MAP of: ./Fgr-S_4_H06_T7.seq check: 9988 from: 1 to: 886 Fgr-S_4_H06_T7 886 26 658 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:35 .. EagI NotI EcoRV BsrBI| BsaBI | EcoRI ApaI XhoI || BstXI | | PstI|Bpu1102I EagI | | || | | | || | | GGGATTGAATTGGGCCCTCTANATGCTGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACACAATG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCCTAACTTAACCCGGGAGATNTACGACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGTGTTAC a G I E L G P L ? A A R A A A S V M D I C R I R L S V V A A E V H N E - b G L N W A L ? M L L E R P P V * W I S A E F G L A W S R P R Y T M - c D * I G P S ? C C S S G R Q C D G Y L Q N S A * R G R G R G T Q * - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d S Q I P G E ? H Q E L P R W H S P Y R C F E A * R P R P R P V C H - e P N F Q A R * ? S S S R G G T H H I D A S N P K A H D R G L Y V I - f I S N P G R ? A A R A A A L T I S I Q L I R S L T T A A S T C L - Bce83I BsgI | | AAAGATGGGAAGGTGTCCCTTTCATTCTTAAAGCTGGTAAAGCATTGAACTCAAGAAAAGCAGAAATTCGTGTGCAGTTCAAGGATGTTCCCGGTGACAT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TTTCTACCCTTCCACAGGGAAAGTAAGAATTTCGACCATTTCGTAACTTGAGTTCTTTTCGTCTTTAAGCACACGTCAAGTTCCTACAAGGGCCACTGTA a R W E G V P F I L K A G K A L N S R K A E I R V Q F K D V P G D I - b K D G K V S L S F L K L V K H * T Q E K Q K F V C S S R M F P V T F - c K M G R C P F H S * S W * S I E L K K S R N S C A V Q G C S R * H - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d F I P L H G K * E * L Q Y L M S S L F L L F E H A T * P H E R H C - e F S P F T D R E N K F S T F C Q V * S F C F N T H L E L I N G T V - f S L H S P T G K M R L A P L A N F E L F A S I R T C N L S T G P S M - DraI BpmI BsrGI | | | TTTTAAATGTAAGAAGCAAGGGAAGAAATGAGTTTGTCATACGCCTCCAGCCATCAGAAGCCATGTACATGAAACTAACTGTGAAGAAACCTGGATTGGA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AAAATTTACATTCTTCGTTCCCTTCTTTACTCAAACAGTATGCGGAGGTCGGTAGTCTTCGGTACATGTACTTTGATTGACACTTCTTTGGACCTAACCT a F K C K K Q G K K * V C H T P P A I R S H V H E T N C E E T W I G - b L N V R S K G R N E F V I R L Q P S E A M Y M K L T V K K P G L E - c F * M * E A R E E M S L S Y A S S H Q K P C T * N * L * R N L D W K - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d K * I Y S A L S S I L K D Y A E L W * F G H V H F * S H L F R S Q - e N K F T L L L P L F S N T M R R W G D S A M Y M F S V T F F G P N S - f K L H L F C P F F H T Q * V G G A M L L W T C S V L Q S S V Q I P - NdeI BsaI | | AATGGCTACTGAACAGAGTGAACTTGATCTGTCATATGGGATGCGTTACCAAGATGTCAAAATTCCAGAGGCATACGAACGCCTCATTTTGGATACAATA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTACCGATGACTTGTCTCACTTGAACTAGACAGTATACCCTACGCAATGGTTCTACAGTTTTAAGGTCTCCGTATGCTTGCGGAGTAAAACCTATGTTAT a N G Y * T E * T * S V I W D A L P R C Q N S R G I R T P H F G Y N K - b M A T E Q S E L D L S Y G M R Y Q D V K I P E A Y E R L I L D T I - c W L L N R V N L I C H M G C V T K M S K F Q R H T N A S F W I Q * - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d F H S S F L T F K I Q * I P H T V L I D F N W L C V F A E N Q I C Y - e I A V S C L S S S R D Y P I R * W S T L I G S A Y S R R M K S V I - f F P * Q V S H V Q D T M H S A N G L H * F E L P M R V G * K P Y L - AceIII DraIII| BseRI || Eco57I BsbI | || BglII | NgoAIV | | || | | | AGAGGAGACCAGCAACACTTTGTGCGCCGAGATGAGCTGAAGGCTGCCTGGCAGATCTTCACTCCCTTGTTGCACGACATCGACGCCGGCAAGCTGAAGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TCTCCTCTGGTCGTTGTGAAACACGCGGCTCTACTCGACTTCCGACGGACCGTCTAGAAGTGAGGGAACAACGTGCTGTAGCTGCGGCCGTTCGACTTCC a R R P A T L C A P R * A E G C L A D L H S L V A R H R R R Q A E G - b R G D Q Q H F V R R D E L K A A W Q I F T P L L H D I D A G K L K A - c E E T S N T L C A E M S * R L P G R S S L P C C T T S T P A S * R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d S S V L L V K H A S I L Q L S G P L D E S G Q Q V V D V G A L Q L - e L P S W C C K T R R S S S F A A Q C I K V G K N C S M S A P L S F - f L L L G A V S Q A G L H A S P Q R A S R * E R T A R C R R R C A S P - Eco57I | CTGTTTCATACAAGCCTGGCAGCCGAGGCCCCAAGGAAGCTGATGAACTGAGTGAGAAGGTCGGGTACATGCAGACCCACGGTTACATCTGGATACCGCC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GACAAAGTATGTTCGGACCGTCGGCTCCGGGGTTCCTTCGACTACTTGACTCACTCTTCCAGCCCATGTACGTCTGGGTGCCAATGTAGACCTATGGCGG a C F I Q A W Q P R P Q G S * * T E * E G R V H A D P R L H L D T A - b V S Y K P G S R G P K E A D E L S E K V G Y M Q T H G Y I W I P P - c L F H T S L A A E A P R K L M N * V R R S G T C R P T V T S G Y R P - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S N * V L R A A S A G L F S I F Q T L L D P V H L G V T V D P Y R - e A T E Y L G P L R P G L S A S S S L S F T P Y M C V W P * M Q I G G - f Q K M C A Q C G L G W P L Q H V S H S P R T C A S G R N C R S V A - EarI BsaBI SnaBI | | | CACCCTTGCATAGAGTACCTCCCTCGATCCTTGTAGGTTTGTTTAGCTAGGAAGAGTGAAAGTATCACGGATAAAAATCTTACGTATNTTAGCTGTACCT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GTGGGAACGTATCTCATGGAGGGAGCTAGGAACATCCAAACAAATCGATCCTTCTCACTTTCATAGTGCCTATTTTTAGAATGCATANAATCGACATGGA a H P C I E Y L P R S L * V C L A R K S E S I T D K N L T Y ? S C T C - b T L A * S T S L D P C R F V * L G R V K V S R I K I L R ? L A V P - c P L H R V P P S I L V G L F S * E E * K Y H G * K S Y V ? * L Y L - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d G G K C L T G G E I R T P K N L * S S H F Y * P Y F D * T ? * S Y R - e V R A Y L V E R S G Q L N T * S P L T F T D R I F I K R I ? A T G - f W G Q M S Y R G R D K Y T Q K A L F L S L I V S L F R V Y ? L Q V - EagI NotI BglI| BspMI|| SmaI ||| HindIII SrfI |||BsrBI EcoRI BstXI EagI SpeI BamHI SacI | | ||| | | | | | | | | GCCCGGGCGGCCGCTCGAAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCCGAGCTCGTACAAGCTTGGCGTATCATGGTCATAGCTGTT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CGGGCCCGCCGGCGAGCTTTCGGCTTAAGGTCGTGTGACCGCCGGCAATGATCACCTAGGGCTCGAGCATGTTCGAACCGCATAGTACCAGTATCGACAA a P G G R S K A E F Q H T G G R Y * W I P S S Y K L G V S W S * L F - b A R A A A R K P N S S T L A A V T S G S R A R T S L A Y H G H S C F - c P G R P L E S R I P A H W R P L L V D P E L V Q A W R I M V I A V - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d G P R G S S L R I G A C Q R G N S T S G S S T C A Q R I M T M A T - e A R A A A R F G F E L V S A A T V L P D R A R V L K A Y * P * L Q - f Q G P P R E F A S N W C V P P R * * H I G L E Y L S P T D H D Y S N - BsrBI | TCCTGTGTGAAAATGTATCCGCTCACAATTCCCACACATACGAGCCGAAGCATAAAGTGTTAAGCCTGGGGTGCTAATGAGTGACT 801 ---------+---------+---------+---------+---------+---------+---------+---------+------ 886 AGGACACACTTTTACATAGGCGAGTGTTAAGGGTGTGTATGCTCGGCTTCGTATTTCACAATTCGGACCCCACGATTACTCACTGA a P V * K C I R S Q F P H I R A E A * S V K P G V L M S D - b L C E N V S A H N S H T Y E P K H K V L S L G C * * V T - c S C V K M Y P L T I P T H T S R S I K C * A W G A N E * - 801 ---------+---------+---------+---------+---------+---------+---------+---------+------ 886 d E Q T F I Y G S V I G V C V L R L M F H * A Q P A L S H S - e K R H S F T D A * L E W V Y S G F C L T N L R P H * H T V - f G T H F H I R E C N G C M R A S A Y L T L G P T S I L S - Enzymes that do cut: AceIII ApaI BamHI Bce83I BglI BglII BpmI Bpu1102I BsaI BsaBI BsbI BseRI BsgI BspMI BsrBI BsrGI BstXI DraI DraIII EagI EarI Eco57I EcoRI EcoRV HindIII NdeI NgoAIV NotI PstI SacI SmaI SnaBI SpeI SrfI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BbsI BcgI BclI BfiI BplI Bpu10I BsaXI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrDI BssHII BssSI Bst1107I BstEII Bsu36I ClaI DrdI DrdII EciI Eco47III EcoNI FseI FspI HgiEII HpaI KpnI MfeI MluI MscI NarI NcoI NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RcaI RsrII SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SphI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XmnI