(Linear) MAP of: ./Fgr-S_7_A12_T7.seq check: 2631 from: 1 to: 990 Fgr-S_7_A12_T7 990 180 229 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:35 .. MscI BamHI PvuI | | | GGGGCGTGGCCAGCGGGCGGCGGGGAGAGTAGGGCTTANAGNAGGTTGCTCTTGATGGATCCGATCGCCCTACCGCGCCTGCCATTTATAGTGTCGCAAA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCCCGCACCGGTCGCCCGCCGCCCCTCTCATCCCGAATNTCNTCCAACGAGAACTACCTAGGCTAGCGGGATGGCGCGGACGGTAAATATCACAGCGTTT a G A W P A G G G E S R A ? ? R L L L M D P I A L P R L P F I V S Q N - b G R G Q R A A G R V G L ? ? G C S * W I R S P Y R A C H L * C R K - c G V A S G R R G E * G L ? ? V A L D G S D R P T A P A I Y S V A K - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d P R P W R A A P L T P S ? ? P Q E Q H I R D G * R A Q W K Y H R L - e A H G A P P P S L L A * L L N S K I S G I A R G R R G N I T D C - f P T A L P R R P S Y P K ? ? T A R S P D S R G V A G A M * L T A F - NarI RcaI HindIII | | | ATCGGCTTAACGTGGTCGCGGGCGCAGGCGCCTCTTGAACAGTATCATACTCAGAGGCACGGACTTGTGAATCATCATGAATAATAAAGAAGCTTCAAAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TAGCCGAATTGCACCAGCGCCCGCGTCCGCGGAGAACTTGTCATAGTATGAGTCTCCGTGCCTGAACACTTAGTAGTACTTATTATTTCTTCGAAGTTTC a R L N V V A G A G A S * T V S Y S E A R T C E S S * I I K K L Q R - b I G L T W S R A Q A P L E Q Y H T Q R H G L V N H H E * * R S F K G - c S A * R G R G R R R L L N S I I L R G T D L * I I M N N K E A S K - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d I P K V H D R A C A G R S C Y * V * L C P S T F * * S Y Y L L K L - e F R S L T T A P A P A E Q V T D Y E S A R V Q S D D H I I F F S * L - f D A * R P R P R L R R K F L I M S L P V S K H I M M F L L S A E F - PinAI ScaI | | GCTATCAGGAAATATCTATCTTTTACAGACCGGTAGATTCTCCATTTTCTTCCTATATATATGTCTCTCGTAAGGATTAGTATGTAGTACTTGTGTGCTT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGATAGTCCTTTATAGATAGAAAATGTCTGGCCATCTAAGAGGTAAAAGAAGGATATATATACAGAGAGCATTCCTAATCATACATCATGAACACACGAA a L S G N I Y L L Q T G R F S I F F L Y I C L S * G L V C S T C V L - b Y Q E I S I F Y R P V D S P F S S Y I Y V S R K D * Y V V L V C L - c A I R K Y L S F T D R * I L H F L P I Y M S L V R I S M * Y L C A C - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d P * * S I D I K * L G T S E G N E E * I Y T E R L S * Y T T S T H K - e S D P F I * R K C V P L N E M K K R Y I H R E Y P N T H L V Q T S - f A I L F Y R D K V S R Y I R W K R G I Y I D R T L I L I Y Y K H A - BglII BsgI | NsiI NdeI | | | | GTACTATTTGCTAGTGATGCTTTAGATCTTAGCAACTGCACCTAGCTACCTCATGGTTATGTATGCATACCTAGTATGTGTATGTAACAGGGAAGCATAT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CATGATAAACGATCACTACGAAATCTAGAATCGTTGACGTGGATCGATGGAGTACCAATACATACGTATGGATCATACACATACATTGTCCCTTCGTATA a V L F A S D A L D L S N C T * L P H G Y V C I P S M C M * Q G S I W - b Y Y L L V M L * I L A T A P S Y L M V M Y A Y L V C V C N R E A Y - c T I C * * C F R S * Q L H L A T S W L C M H T * Y V Y V T G K H M - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d Y * K S T I S * I K A V A G L * R M T I Y A Y R T H T H L L S A Y - e T S N A L S A K S R L L Q V * S G * P * T H M G L I H I Y C P L M - f Q V I Q * H H K L D * C S C R A V E H N H I C V * Y T Y T V P F C I - EagI BglI| BspMI|| SmaI ||| BstXI SrfI ||| PvuI EcoRI BsbI | | ||| | | | | GGAGTGGTTTTGCCTCTTTGGTGCATTTAATACAACTAGATGCCTACTGTACCTGCCCGGGCGGCCGATCGAAAGCCGAATTCCAACACACTGGCGGCCC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CCTCACCAAAACGGAGAAACCACGTAAATTATGTTGATCTACGGATGACATGGACGGGCCCGCCGGCTAGCTTTCGGCTTAAGGTTGTGTGACCGCCGGG a S G F A S L V H L I Q L D A Y C T C P G G R S K A E F Q H T G G P - b G V V L P L W C I * Y N * M P T V P A R A A D R K P N S N T L A A R - c E W F C L F G A F N T T R C L L Y L P G R P I E S R I P T H W R P - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P T T K G R Q H M * Y L * I G V T G A R A A S R F G F E L V S A A - e H L P K A E K T C K I C S S A * Q V Q G P P R D F A S N W C V P P G - f S H N Q R K P A N L V V L H R S Y R G P R G I S L R I G V C Q R G - HindIII MscI | | GCACTATTGGATACTAGCTCAGTACCAAGCTTGGAGTAATCATGGCCATAGACTGTCTCCTGTGTTAAATTGTAATCCTGCTCACAATTACACACAACAT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CGTGATAACCTATGATCGAGTCATGGTTCGAACCTCATTAGTACCGGTATCTGACAGAGGACACAATTTAACATTAGGACGAGTGTTAATGTGTGTTGTA a H Y W I L A Q Y Q A W S N H G H R L S P V L N C N P A H N Y T Q H - b T I G Y * L S T K L G V I M A I D C L L C * I V I L L T I T H N I - c A L L D T S S V P S L E * S W P * T V S C V K L * S C S Q L H T T Y - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d R V I P Y * S L V L S P T I M A M S Q R R H * I T I R S V I V C L M - e C * Q I S A * Y W A Q L L * P W L S D G T N F Q L G A * L * V C C - f A S N S V L E T G L K S Y D H G Y V T E Q T L N Y D Q E C N C V V - DraI DrdII SwaI | | ACAAGCCGGAACCATAAACTGTAAATCCTGGGGTGCCCTAATAATGATCTAACTCACATTTAAATGGGATAACCTCACTTACCCCCTTTTCACTCAAAAA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TGTTCGGCCTTGGTATTTGACATTTAGGACCCCACGGGATTATTACTAGATTGAGTGTAAATTTACCCTATTGGAGTGAATGGGGGAAAAGTGAGTTTTT a T S R N H K L * I L G C P N N D L T H I * M G * P H L P P F H S K K - b Q A G T I N C K S W G A L I M I * L T F K W D N L T Y P L F T Q K - c K P E P * T V N P G V P * * * S N S H L N G I T S L T P F S L K K - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d C A P V M F Q L D Q P A R I I I * S V N L H S L R V * G R K V * F - e V L R F W L S Y I R P H G L L S R V * M * I P Y G * K G G K * E F - f Y L G S G Y V T F G P T G * Y H D L E C K F P I V E S V G K E S L F - AACCTTATATTGCCCACTGTAAATAATATAATGGGACCAATACCTCTGTGTAGAAGGAGAAAAAGAAAAATAGGACAGACATACCGATAAACTAAACATT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TTGGAATATAACGGGTGACATTTATTATATTACCCTGGTTATGGAGACACATCTTCCTCTTTTTCTTTTTATCCTGTCTGTATGGCTATTTGATTTGTAA a P Y I A H C K * Y N G T N T S V * K E K K K N R T D I P I N * T F - b N L I L P T V N N I M G P I P L C R R R K R K I G Q T Y R * T K H S - c T L Y C P L * I I * W D Q Y L C V E G E K E K * D R H T D K L N I - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d F R I N G V T F L I I P G I G R H L L L F L F I P C V Y R Y V L C - e F G * I A W Q L Y Y L P V L V E T Y F S F F F F L V S M G I F * V N - f V K Y Q G S Y I I Y H S W Y R Q T S P S F S F Y S L C V S L S F M - CCTGACTCTAATAAACACAAAACGGAATACATTTCCAAACATAGCCCATAAATCAATCTTCATTCAAACGCAAGTAAATACCTGTATNTAATACCTATAT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GGACTGAGATTATTTGTGTTTTGCCTTATGTAAAGGTTTGTATCGGGTATTTAGTTAGAAGTAAGTTTGCGTTCATTTATGGACATANATTATGGATATA a L T L I N T K R N T F P N I A H K S I F I Q T Q V N T C ? * Y L Y - b * L * * T Q N G I H F Q T * P I N Q S S F K R K * I P V ? N T Y I - c P D S N K H K T E Y I S K H S P * I N L H S N A S K Y L Y ? I P I Y - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d E Q S * Y V C F P I C K W V Y G M F * D E N L R L Y I G T ? L V * I - e R V R I F V F R F V N G F M A W L D I K M * V C T F V Q I ? Y R Y - f G S E L L C L V S Y M E L C L G Y I L R * E F A L L Y R Y ? I G I - NdeI | ACATATGTATCAATCCATATCGTACATGAATACNTTATAATTATATAAACGTCACTCACATTATACAGCCTCAACATCACCTACTAAATC 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+ 990 TGTATACATAGTTAGGTATAGCATGTACTTATGNAATATTAATATATTTGCAGTGAGTGTAATATGTCGGAGTTGTAGTGGATGATTTAG a T Y V S I H I V H E Y ? I I I * T S L T L Y S L N I T Y * I - b H M Y Q S I S Y M N T L * L Y K R H S H Y T A S T S P T K - c I C I N P Y R T * I ? Y N Y I N V T H I I Q P Q H H L L N - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+ 990 d C I Y * D M D Y M F V ? Y N Y L R * E C * V A E V D G V L D - e V Y T D I W I T C S Y ? I I I Y V D S V N Y L R L M V * * I - f Y M H I L G Y R V H I ? * L * I F T V * M I C G * C * R S F - Enzymes that do cut: BamHI BglI BglII BsbI BsgI BspMI BstXI DraI DrdII EagI EcoRI HindIII MscI NarI NdeI NsiI PinAI PvuI RcaI ScaI SmaI SrfI SwaI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BclI BfiI BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BseRI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrBI BsrDI BsrGI BssHII BssSI Bst1107I BstEII Bsu36I ClaI DraIII DrdI EarI EciI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HpaI KpnI MfeI MluI NcoI NgoAIV NheI NotI NruI NspV PacI Pfl1108I PflMI PmeI PmlI PshAI Psp1406I PstI PvuII RsrII SacI SacII SalI SanDI SapI SexAI SfiI SgfI SgrAI SnaBI SpeI SphI Sse8387I Sse8647I SspI StuI Tth111I VspI XbaI XcmI XhoI XmnI