(Linear) MAP of: ./Fgr-S_7_H09_T7.seq check: 8633 from: 1 to: 901 Fgr-S_7_H09_T7 901 26 685 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:35 .. EagI NotI EcoRV BsrBI| BsaBI | EcoRI ApaI XhoI || BstXI | | PstI|Bpu1102I EagI | | || | | | || | | NGGATTGAATTGGGCCCTCTANATGCTGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACTCAGCA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 NCCTAACTTAACCCGGGAGATNTACGACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGAGTCGT a ? I E L G P L ? A A R A A A S V M D I C R I R L S V V A A E V L S I - b G L N W A L ? M L L E R P P V * W I S A E F G L A W S R P R Y S A - c D * I G P S ? C C S S G R Q C D G Y L Q N S A * R G R G R G T Q H - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d S Q I P G E ? H Q E L P R W H S P Y R C F E A * R P R P R P V * C - e P N F Q A R * ? S S S R G G T H H I D A S N P K A H D R G L Y E A - f I S N P G R ? A A R A A A L T I S I Q L I R S L T T A A S T S L - BsrBI BsaXI | | | TATAACAGGTTTTACCCATTGTATAAGCAGCAAAATTACACGACCATAGTAGAACAAAAACCACCGCTCCGATTTACGATACGCAGCACCCGAGTAACAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ATATTGTCCAAAATGGGTAACATATTCGTCGTTTTAATGTGCTGGTATCATCTTGTTTTTGGTGGCGAGGCTAAATGCTATGCGTCGTGGGCTCATTGTC a * Q V L P I V * A A K L H D H S R T K T T A P I Y D T Q H P S N R - b Y N R F Y P L Y K Q Q N Y T T I V E Q K P P L R F T I R S T R V T G - c I T G F T H C I S S K I T R P * * N K N H R S D L R Y A A P E * Q - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d I V P K V W Q I L L L I V R G Y Y F L F W R E S K R Y A A G S Y C - e Y L L N * G N Y L C C F * V V M T S C F G G S R N V I R L V R T V - f M Y C T K G M T Y A A F N C S W L L V F V V A G I * S V C C G L L L - Bpu10I EcoRV | | GGTATTCGACTCCAAAAACGAAACTACCTAAGCTATTTTGAGAGCACAAGTTCCATACTAGGTTCGATATCCGAAGGATATATCAAGACTCTGAAAACCA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CCATAAGCTGAGGTTTTTGCTTTGATGGATTCGATAAAACTCTCGTGTTCAAGGTATGATCCAAGCTATAGGCTTCCTATATAGTTCTGAGACTTTTGGT a V F D S K N E T T * A I L R A Q V P Y * V R Y P K D I S R L * K P - b Y S T P K T K L P K L F * E H K F H T R F D I R R I Y Q D S E N Q - c G I R L Q K R N Y L S Y F E S T S S I L G S I S E G Y I K T L K T K - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d P I R S W F R F * R L * K S L V L E M S P E I D S P Y I L V R F V - e P Y E V G F V F S G L S N Q S C L N W V L N S I R L I Y * S E S F W - f T N S E L F S V V * A I K L A C T G Y * T R Y G F S I D L S Q F G - ScaI BplI EcoNI | | | AACGATAATACTGGTAAGCAGGACACCCAAACAGGCCACCGCACCGAAGGCAGATCAGTACTTGTAGTCCTTGACGTGGAGGCTCTCAGAGGCCCCCTCG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTGCTATTATGACCATTCGTCCTGTGGGTTTGTCCGGTGGCGTGGCTTCCGTCTAGTCATGAACATCAGGAACTGCACCTCCGAGAGTCTCCGGGGGAGC a N D N T G K Q D T Q T G H R T E G R S V L V V L D V E A L R G P L A - b T I I L V S R T P K Q A T A P K A D Q Y L * S L T W R L S E A P S - c R * Y W * A G H P N R P P H R R Q I S T C S P * R G G S Q R P P R - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d L R Y Y Q Y A P C G F L G G C R L C I L V Q L G Q R P P E * L G G R - e V I I S T L L V G L C A V A G F A S * Y K Y D K V H L S E S A G E - f F S L V P L C S V W V P W R V S P L D T S T T R S T S A R L P G R - XmnI BglI | | CCGAGGGTGGCATCGCCCTTGTAGGTGCCGAGGGTGGCCTCAGAGTTGGCCTTGCACCTCACCAGGAACGCCTTCCTGGCCTTCTGCTCGTTCTCCACCT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGCTCCCACCGTAGCGGGAACATCCACGGCTCCCACCGGAGTCTCAACCGGAACGTGGAGTGGTCCTTGCGGAAGGACCGGAAGACGAGCAAGAGGTGGA a E G G I A L V G A E G G L R V G L A P H Q E R L P G L L L V L H L - b P R V A S P L * V P R V A S E L A L H L T R N A F L A F C S F S T L - c R G W H R P C R C R G W P Q S W P C T S P G T P S W P S A R S P P - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R P H C R G Q L H R P H G * L Q G Q V E G P V G E Q G E A R E G G - e G L T A D G K Y T G L T A E S N A K C R V L F A K R A K Q E N E V - f A S P P M A R T P A S P P R L T P R A G * W S R R G P R R S T R W R - BsaI StuI Bce83I BpmI NcoI XhoI | | | | | | | TGCCAGCCCAGGCCTTGAGGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGTTCCATGGCTTCTTGGTCTCGAGCTTGTTCATGGCGTTCAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 ACGGTCGGGTCCGGAACTCCCACGAGACGACCTCCCGTGCGGGCTTCCTCTTCCTGTCCAAGGTACCGAAGAACCAGAGCTCGAACAAGTACCGCAAGTC a A S P G L E G A L L E G T P E G E G Q V P W L L G L E L V H G V Q - b P A Q A L R V L C W R A R P K E K D R F H G F L V S S L F M A F R - c C Q P R P * G C S A G G H A R R R R T G S M A S W S R A C S W R S G - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d Q W G L G Q P H E A P P C A R L L L V P E M A E Q D R A Q E H R E - e K G A W A K L T S Q Q L A R G F S F S L N W P K K T E L K N M A N L - f A L G P R S P A R S S P V G S P S P C T G H S R P R S S T * P T * - BseRI BseRI | BbsI BpmI | | | | GTTCAGGGTCGCCTCCTCCTCGCTCTGTCCACCAGAGAGGAAGACAATGGCTGGGACGGCAGCAGGGACAGTCCTCTGGAGGGTGCGGACGGTGTACTCA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CAAGTCCCAGCGGAGGAGGAGCGAGACAGGTGGTCTCTCCTTCTGTTACCGACCCTGCCGTCGTCCCTGTCAGGAGACCTCCCACGCCTGCCACATGAGT a V Q G R L L L A L S T R E E D N G W D G S R D S P L E G A D G V L S - b F R V A S S S L C P P E R K T M A G T A A G T V L W R V R T V Y S - c S G S P P P R S V H Q R G R Q W L G R Q Q G Q S S G G C G R C T Q - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P E P D G G G R E T W W L P L C H S P R C C P C D E P P H P R H V * - e N L T A E E E S Q G G S L F V I A P V A A P V T R Q L T R V T Y E - f T * P R R R R A R D V L S S S L P Q S P L L S L G R S P A S P T S - EagI NotI BglI| BspMI|| SmaI ||| Bsu36I BstXI BstEII SrfI |||BsrBI EcoRI BstXI | | | | ||| | | | GCAATCACCTCAGGGGCCACCTTCTTGGCGTCAGATCGCAGGGGTGACCATACCTGCCCGGGCGGCCGCTCGAAAGCCGAATTCCAGCACACTGGCAGGN 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CGTTAGTGGAGTCCCCGGTGGAAGAACCGCAGTCTAGCGTCCCCACTGGTATGGACGGGCCCGCCGGCGAGCTTTCGGCTTAAGGTCGTGTGACCGTCCN a N H L R G H L L G V R S Q G * P Y L P G R P L E S R I P A H W Q ? - b A I T S G A T F L A S D R R G D H T C P G G R S K A E F Q H T G R ? - c Q S P Q G P P S W R Q I A G V T I P A R A A A R K P N S S T L A G - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d C D G * P G G E Q R * I A P T V M G A R A A A R F G F E L V S A P - e A I V E P A V K K A D S R L P S W V Q G P P R E F A S N W C V P L - f L L * R L P W R R P T L D C P H G Y R G P R G S S L R I G A C Q C ? - BamHI SacI KpnI BsrBI MfeI | | | | | CGTTACTAAGTGGATCCGAGCTCGGTACCCAGCTTGGGCGTAATCATGGTCATAGCTGNTTACTGAGTGAAAATTGGTATCCGCTCACAATTGCCACAAC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GCAATGATTCACCTAGGCTCGAGCCATGGGTCGAACCCGCATTAGTACCAGTATCGACNAATGACTCACTTTTAACCATAGGCGAGTGTTAACGGTGTTG a V T K W I R A R Y P A W A * S W S * L ? T E * K L V S A H N C H N - b L L S G S E L G T Q L G R N H G H S ? L L S E N W Y P L T I A T T - c R Y * V D P S S V P S L G V I M V I A ? Y * V K I G I R S Q L P Q - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d R * * T S G L E T G L K P T I M T M A ? * Q T F I P I R E C N G C - e ? N S L P D S S P V W S P R L * P * L Q ? S L S F Q Y G S V I A V V - f T V L H I R A R Y G A Q A Y D H D Y S ? V S H F N T D A * L Q W L - C 901 - 901 G a - b - c - 901 - 901 d G - e - f - Enzymes that do cut: ApaI BamHI BbsI Bce83I BglI BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BseRI BspMI BsrBI BstEII BstXI Bsu36I EagI EcoNI EcoRI EcoRV KpnI MfeI NcoI NotI PstI SacI ScaI SmaI SrfI StuI XhoI XmnI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BcgI BclI BfiI BglII BsbI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrDI BsrGI BssHII BssSI Bst1107I ClaI DraI DraIII DrdI DrdII EarI EciI Eco47III Eco57I FseI FspI HgiEII HindIII HpaI MluI MscI NarI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RcaI RsrII SacII SalI SanDI SapI SexAI SfiI SgfI SgrAI SnaBI SpeI SphI Sse8387I Sse8647I SspI SwaI Tth111I VspI XbaI XcmI