(Linear) MAP of: ./Fgr-S_8_A11_T7.seq check: 6152 from: 1 to: 949 Fgr-S_8_A11_T7 949 279 430 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. BsaBI NarI SacII BsaXI BseRI ApaI SphI EagI PflMI | | | | | | | | | | CGGCGCCGCGGACGGGAGGCAGGGGGGGAGGAGCAGGCGTTAAGNNAGNAGGGAAGGCATAGGGCCCTCTATAGCATGCTCGACGGCCGCCATGTGATGG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GCCGCGGCGCCTGCCCTCCGTCCCCCCCTCCTCGTCCGCAATTCNNTCNTCCCTTCCGTATCCCGGGAGATATCGTACGAGCTGCCGGCGGTACACTACC a R R R G R E A G G E E Q A L ? ? ? G R H R A L Y S M L D G R H V M A - b G A A D G R Q G G R S R R * ? ? R E G I G P S I A C S T A A M * W - c A P R T G G R G G G A G V K ? ? G K A * G P L * H A R R P P C D G - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d A G R V P P L P P P A P T L ? ? P F A Y P G R Y C A R R G G H S P - e P A A S P L C P P L L L R * ? L L S P M P G E I A H E V A A M H H - f R R P R S A P P S S C A N L ? ? P L C L A R * L M S S P R W T I - Bpu1102I PstI | EagI NcoI BsbI | | | | | CTATCTGCAGAATCGGCTTAGCGTGGTCCCGGCCGACGTGCCCATGGAAAACTTCACCCTTATCAACTTGTGGCAACACCTGGATCATGTCTACTTACTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GATAGACGTCTTAGCCGAATCGCACCAGGGCCGGCTGCACGGGTACCTTTTGAAGTGGGAATAGTTGAACACCGTTGTGGACCTAGTACAGATGAATGAA a I C R I G L A W S R P T C P W K T S P L S T C G N T W I M S T Y F - b L S A E S A * R G P G R R A H G K L H P Y Q L V A T P G S C L L T S - c Y L Q N R L S V V P A D V P M E N F T L I N L W Q H L D H V Y L L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d * R C F R S L T T G A S T G M S F K V R I L K H C C R S * T * K S - e S D A S D A * R P G P R R A W P F S * G * * S T A V G P D H R S V - f A I Q L I P K A H D R G V H G H F V E G K D V Q P L V Q I M D V * K - BseRI SexAI | | CACCCTGGCGATGCCTCCTAACTATTCTCCTCAGTCGGCTACCACCTTGTTCCGTAGAACTGGAAACCCTTGATTTCACACCAGGTTGTTGAAGTGTTTA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTGGGACCGCTACGGAGGATTGATAAGAGGAGTCAGCCGATGGTGGAACAAGGCATCTTGACCTTTGGGAACTAAAGTGTGGTCCAACAACTTCACAAAT a T L A M P P N Y S P Q S A T T L F R R T G N P * F H T R L L K C L - b P W R C L L T I L L S R L P P C S V E L E T L D F T P G C * S V Y - c H P G D A S * L F S S V G Y H L V P * N W K P L I S H Q V V E V F T - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d * G P S A E * S N E E T P * W R T G Y F Q F G K I E C W T T S T N - e E G Q R H R R V I R R L R S G G Q E T S S S V R S K V G P Q Q L T * - f V R A I G G L * E G * D A V V K N R L V P F G Q N * V L N N F H K - BfiI PflMI Eco57I BbsI | | | | CTTCACACACTGGGGCATTAACCCAACGAGTGGTCATGTGAAGGTTTAACCGAACACTGAAGTCAAACTTCCCTTTCATTCAGAGAATCTGCCACTCGTC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GAAGTGTGTGACCCCGTAATTGGGTTGCTCACCAGTACACTTCCAAATTGGCTTGTGACTTCAGTTTGAAGGGAAAGTAAGTCTCTTAGACGGTGAGCAG a L H T L G H * P N E W S C E G L T E H * S Q T S L S F R E S A T R L - b F T H W G I N P T S G H V K V * P N T E V K L P F H S E N L P L V - c S H T G A L T Q R V V M * R F N R T L K S N F P F I Q R I C H S S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d V E C V P A N V W R T T M H L N L R V S F D F K G K M * L I Q W E D - e K V C Q P M L G V L P * T F T * G F V S T L S G K * E S F R G S T - f S * V S P C * G L S H D H S P K V S C Q L * V E R E N L S D A V R - Sse8647I BsmBI BsaXI BstXI BsrGI | | | | | TTCTCCTGTTTCACCCGAGCCATCAAGGTCCTCCGCGTCGATGTTGTCGGAGACGCCGTATCCTGAACAGCCGGACCCATCATCCTGGTTGTACATCTGT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AAGAGGACAAAGTGGGCTCGGTAGTTCCAGGAGGCGCAGCTACAACAGCCTCTGCGGCATAGGACTTGTCGGCCTGGGTAGTAGGACCAACATGTAGACA a L L F H P S H Q G P P R R C C R R R R I L N S R T H H P G C T S V - b F S C F T R A I K V L R V D V V G D A V S * T A G P I I L V V H L F - c S P V S P E P S R S S A S M L S E T P Y P E Q P D P S S W L Y I C - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d E G T E G S G D L D E A D I N D S V G Y G S C G S G D D Q N Y M Q - e K E Q K V R A M L T R R T S T T P S A T D Q V A P G M M R T T C R - f R R R N * G L W * P G G R R H Q R L R R I R F L R V W * G P Q V D T - HindIII Bpu1102I EcoRI BstXI EagI SpeI BamHI SacI KpnI | | | | | | | | | | TTCGACGGCTGACCTCGGGCGCGACCACGCTAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGCGTAATC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AAGCTGCCGACTGGAGCCCGCGCTGGTGCGATTCGGCTTAAGGTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACCGCATTAG a S T A D L G R D H A K P N S S T L A A V T S G S E L G T K L G V I - b R R L T S G A T T L S R I P A H W R P L L V D P S S V P S L A * S - c F D G * P R A R P R * A E F Q H T G G R Y * W I R A R Y Q A W R N H - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d K S P Q G R A R G R * A S N W C V P P R * * H I R A R Y W A Q R L - e N R R S V E P A V V S L R I G A C Q R G N S T S G L E T G L K A Y D - f E V A S R P R S W A L G F E L V S A A T V L P D S S P V L S P T I - BsrBI | ATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACTAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TACCAGTATCGACAAAGGACACACTTTAACAATAGGCGAGTGTTAAGGTGTGTTGTATGATCGGCCTTCGTATTTCACATTTCGGACCCCACGGATTACT a M V I A V S C V K L L S A H N S T Q H T S R K H K V * S L G C L M S - b W S * L F P V * N C Y P L T I P H N I L A G S I K C K A W G A * * - c G H S C F L C E I V I R S Q F H T T Y * P E A * S V K P G V P N E - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d * P * L Q K R H S I T I R E C N W V V Y * G S A Y L T F G P T G L S - e H D Y S N G T H F Q * G S V I G C L M S A P L M F H L A Q P A * H - f M T M A T E Q T F N N D A * L E V C C V L R F C L T Y L R P H R I - VspI VspI BseRI | | | GTGAGCTAACTTACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAATCGGGAAAACTGGTTTGCCCTCTGCATTAATGAAATCGGCCCACTCCTCCGG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CACTCGATTGAATGTAATTAACGCAACGCGAGTGACGGGCGAAAGGTTAGCCCTTTTGACCAAACGGGAGACGTAATTACTTTAGCCGGGTGAGGAGGCC a E L T Y I N C V A L T A R F P I G K T G L P S A L M K S A H S S G - b V S * L T L I A L R S L P A F Q S G K L V C P L H * * N R P T P P G - c * A N L H * L R C A H C P L S N R E N W F A L C I N E I G P L L R - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d H A L K C * N R Q A * Q G S E L R S F Q N A R Q M L S I P G S R R - e T L * S V N I A N R E S G A K W D P F S T Q G R C * H F R G V G G - f L S S V * M L Q T A S V A R K G I P F V P K G E A N I F D A W E E P - BsaXI | GGAGAGGCGGTTTGCCGTATTGGGCGGCTTTTCCGCTTCCTCGGTAACTTGACTCGCTGCGCCTCGGACCATTCGGATGCCGGAAACTGTATTAGCCTCA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 CCTCTCCGCCAAACGGCATAACCCGCCGAAAAGGCGAAGGAGCCATTGAACTGAGCGACGCGGAGCCTGGTAAGCCTACGGCCTTTGACATAATCGGAGT a E R R F A V L G G F S A S S V T * L A A P R T I R M P E T V L A S - b R G G L P Y W A A F P L P R * L D S L R L G P F G C R K L Y * P H - c G E A V C R I G R L F R F L G N L T R C A S D H S D A G N C I S L T - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d P S A T Q R I P R S K R K R P L K V R Q A E S W E S A P F Q I L R - e P L P P K G Y Q A A K G S G R Y S S E S R R P G N P H R F S Y * G * - f S L R N A T N P P K E A E E T V Q S A A G R V M R I G S V T N A E - CTCAAAGGCGGCTATACCGGGTTTCCCCCGAATGAGGGGGAAAACCCCG 901 ---------+---------+---------+---------+--------- 949 GAGTTTCCGCCGATATGGCCCAAAGGGGGCTTACTCCCCCTTTTGGGGC a L K G G Y T G F P P N E G E N P - b S K A A I P G F P R M R G K T P - c Q R R L Y R V S P E * G G K P - 901 ---------+---------+---------+---------+--------- 949 d V * L R S Y R T E G S H P P F G R - e E F A A I G P K G R I L P F V G - f S L P P * V P N G G F S P S F G - Enzymes that do cut: ApaI BamHI BbsI BfiI Bpu1102I BsaBI BsaXI BsbI BseRI BsmBI BsrBI BsrGI BstXI EagI Eco57I EcoRI HindIII KpnI NarI NcoI PflMI PstI SacI SacII SexAI SpeI SphI Sse8647I VspI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII Bce83I BcgI BclI BglI BglII BplI BpmI Bpu10I BsaI BsgI BsiWI BsmI BspEI BspGI BspLU11I BspMI BsrDI BssHII BssSI Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EarI EciI Eco47III EcoNI EcoRV FseI FspI HgiEII HpaI MfeI MluI MscI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RcaI RsrII SalI SanDI SapI ScaI SfiI SgfI SgrAI SmaI SnaBI SrfI Sse8387I SspI StuI SwaI Tth111I XbaI XcmI XhoI XmnI