(Linear) MAP of: ./Fgr-S_8_D01_T7.seq check: 8302 from: 1 to: 898 Fgr-S_8_D01_T7 898 26 617 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EagI NotI EcoRV BsrBI| BsaBI | EcoRI Sse8647I NspV ApaI XhoI || BstXI | | PstI|Bpu1102I EagI | | | | || | | | || | | | GGATTCGAATGGGCCCTCTATAGACATGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTCCTAGTTC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCTAAGCTTACCCGGGAGATATCTGTACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCAGGATCAAG a G F E W A L Y R H A R A A A S V M D I C R I R L S V V A A E V L V L - b D S N G P S I D M L E R P P V * W I S A E F G L A W S R P R S * F - c I R M G P L * T C S S G R Q C D G Y L Q N S A * R G R G R G P S S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d I R I P G R Y V H E L P R W H S P Y R C F E A * R P R P R P G L E - e S E F P G E I S M S S R G G T H H I D A S N P K A H D R G L D * N - f N S H A R * L C A R A A A L T I S I Q L I R S L T T A A S T R T - EarI SapI BpmI Bpu10I DraI | | | | | TGGAGATTACACCTTTTCCTGTTGGAACCCTCACTGAGAGTGACTACCGCAAGGCCGAGAGGCTTGAAATGGTGCTGAGGATGAGTGCCTCCCTTTAAAC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ACCTCTAATGTGGAAAAGGACAACCTTGGGAGTGACTCTCACTGATGGCGTTCCGGCTCTCCGAACTTTACCACGACTCCTACTCACGGAGGGAAATTTG a E I T P F P V G T L T E S D Y R K A E R L E M V L R M S A S L * T - b W R L H L F L L E P S L R V T T A R P R G L K W C * G * V P P F K P - c G D Y T F S C W N P H * E * L P Q G R E A * N G A E D E C L P L N - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d P S * V K E Q Q F G * Q S H S G C P R S A Q F P A S S S H R G K F - e Q L N C R K R N S G E S L T V V A L G L P K F H H Q P H T G G K L - f R S I V G K G T P V R V S L S * R L A S L S S I T S L I L A E R * V - CAGAAGAGCCATTTTCCACTTCCACCTCATAACTCCTTTTTGCCCAGATTGTAAATTGTCTACCATTGGGTCTGTAAATTGATGTTGTGTCGCTAGAAAC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTCTTCTCGGTAAAAGGTGAAGGTGGAGTATTGAGGAAAAACGGGTCTAACATTTAACAGATGGTAACCCAGACATTTAACTACAACACAGCGATCTTTG a R R A I F H F H L I T P F C P D C K L S T I G S V N * C C V A R N - b E E P F S T S T S * L L F A Q I V N C L P L G L * I D V V S L E T - c Q K S H F P L P P H N S F L P R L * I V Y H W V C K L M L C R * K L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d W F L W K G S G G * L E K K G L N Y I T * W Q T Q L N I N H R * F - e G S S G N E V E V E Y S R K A W I T F Q R G N P R Y I S T T D S S V - f L L A M K W K W R M V G K Q G S Q L N D V M P D T F Q H Q T A L F - EagI NotI BglI| BspMI|| Bpu1102I SmaI ||| DraI BplI | SrfI |||BsrBI EcoRI | | | | ||| | | TCTCCTTTAAACCTGAGTTCTGCTCAGCATTTTGAGATATTTGAGGCCAGAACTCTTTTGTTTTTTGTACCTGCCCGGGCGGCCGCTCGAAGCCGAATTC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AGAGGAAATTTGGACTCAAGACGAGTCGTAAAACTCTATAAACTCCGGTCTTGAGAAAACAAAAAACATGGACGGGCCCGCCGGCGAGCTTCGGCTTAAG a S P L N L S S A Q H F E I F E A R T L L F F V P A R A A A R S R I P - b L L * T * V L L S I L R Y L R P E L F C F L Y L P G R P L E A E F - c S F K P E F C S A F * D I * G Q N S F V F C T C P G G R S K P N S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S E K L G S N Q E A N Q S I Q P W F E K T K Q V Q G P P R E F G F E - e R R * V Q T R S L M K L Y K L G S S K Q K K Y R G P R G S S A S N - f E G K F R L E A * C K S I N S A L V R K N K T G A R A A A R L R I - HindIII BstXI EagI SpeI BamHI SacI KpnI | BsrBI | | | | | | | | CAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCAC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACCGCATTAGTACCAGTATCGACAAAGGACACACTTTAACAATAGGCGAGTG a A H W R P L L V D P S S V P S L A * S W S * L F P V * N C Y P L T - b Q H T G G R Y * W I R A R Y Q A W R N H G H S C F L C E I V I R S Q - c S T L A A V T S G S E L G T K L G V I M V I A V S C V K L L S A H - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d L V S A A T V L P D S S P V L S P T I M T M A T E Q T F N N D A * - e W C V P P R * * H I R A R Y W A Q R L * P * L Q K R H S I T I R E - f G A C Q R G N S T S G L E T G L K A Y D H D Y S N G T H F Q * G S V - VspI | AATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCCCTGCCCGCT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TTAAGGTGTGTTGTATGCTCGGCCTTCGTATTTCACATTTCGGACCCCACGGATTACTCACTCGATTGAGTGTAATTAACGCAACGCGAGGGACGGGCGA a I P H N I R A G S I K C K A W G A * * V S * L T L I A L R S L P A - b F H T T Y E P E A * S V K P G V P N E * A N S H * L R C A P C P L - c N S T Q H T S R K H K V * S L G C L M S E L T H I N C V A L P A R F - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L E V C C V L R F C L T Y L R P H R I L S S V * M L Q T A S G A R - e C N W V V Y S G S A Y L T F G P T G L S H A L E C * N R Q A G Q G S - f I G C L M R A P L M F H L A Q P A * H T L * S V N I A N R E R G A - PvuII VspI BsaXI | | | TTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTTCGCTTTCTTGCTCA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AAGGTCAGCCCTTTGGACAGCACGGTCGACGTAATTACTTAGCCGGTTGCGCGCCCCTCTCCGCCAAACGCATAACCCGCGAGAAAGCGAAAGAACGAGT a F Q S G N L S C Q L H * * I G Q R A G R G G L R I G R S F A F L L T - b S S R E T C R A S C I N E S A N A R G E A V C V L G A L S L S C S - c P V G K P V V P A A L M N R P T R G E R R F A Y W A L F R F L A H - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d K G T P F G T T G A A N I F R G V R P S L R N A Y Q A S K R K R A * - e E L R S V Q R A L Q M L S D A L A R P S A T Q T N P A R E S E Q E - f K W D P F R D H W S C * H I P W R A P L P P K R I P R E K A K K S - EciI | CTGACTCCCTGCGCTCGGTCGTTCGGCTGCGGGAACCGGATCAGCTTACTCAAAGGCGGAATACGGGTATTCACAGATCAGGGGATAACGCCGGGAAGAA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GACTGAGGGACGCGAGCCAGCAAGCCGACGCCCTTGGCCTAGTCGAATGAGTTTCCGCCTTATGCCCATAAGTGTCTAGTCCCCTATTGCGGCCCTTCTT a D S L R S V V R L R E P D Q L T Q R R N T G I H R S G D N A G K N - b L T P C A R S F G C G N R I S L L K G G I R V F T D Q G I T P G R T - c * L P A L G R S A A G T G S A Y S K A E Y G Y S Q I R G * R R E E - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d Q S G A S P R E A A P V P D A * E F A S Y P Y E C I L P Y R R S S - e S V G Q A R D N P Q P F R I L K S L P P I R T N V S * P I V G P L - f V S E R R E T T R S R S G S * S V * L R F V P I * L D P S L A P F F - Bsu36I | CTTGTGAACAAAAGGCCACCAAAAGGCCCGGAACCTAAAAAGGCCCGGTTGTTGGCGTTTTTTCCTTAGGCTCCCGCCCCCCTGAAAAAACATTACAA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+-------- 898 GAACACTTGTTTTCCGGTGGTTTTCCGGGCCTTGGATTTTTCCGGGCCAACAACCGCAAAAAAGGAATCCGAGGGCGGGGGGACTTTTTTGTAATGTT a L * T K G H Q K A R N L K R P G C W R F F L R L P P P * K N I T - b C E Q K A T K R P G T * K G P V V G V F S L G S R P P E K T L Q - c L V N K R P P K G P E P K K A R L L A F F P * A P A P L K K H Y - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+-------- 898 d S T F L L G G F P G S G L F A R N N A N K G * A G A G R F F C * L - e V Q S C F A V L L G P V * F P G T T P T K E K P E R G G S F V N C - f K H V F P W W F A R F R F L G P Q Q R K K R L S G G G Q F F M V - Enzymes that do cut: ApaI BamHI BglI BplI BpmI Bpu10I Bpu1102I BsaBI BsaXI BspMI BsrBI BstXI Bsu36I DraI EagI EarI EciI EcoRI EcoRV HindIII KpnI NotI NspV PstI PvuII SacI SapI SmaI SpeI SrfI Sse8647I VspI XhoI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BclI BfiI BglII BsaI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrDI BsrGI BssHII BssSI Bst1107I BstEII ClaI DraIII DrdI DrdII Eco47III Eco57I EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NsiI PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SalI SanDI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI Sse8387I SspI StuI SwaI Tth111I XbaI XcmI XmnI