(Linear) MAP of: ./Fgr-S_8_F11_T7.seq check: 5078 from: 1 to: 958 Fgr-S_8_F11_T7 958 88 606 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. BseRI EagI PflMI | | | CGGGCCAGAGGGAGGGGGGCTGCTGGGGAGGAGCAGGCCCNNAGNNAGNAAGGGAACCTCTTGATGCGATCTGATTACATCCTACCACGGCCGCCATGTG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GCCCGGTCTCCCTCCCCCCGACGACCCCTCCTCGTCCGGGNNTCNNTCNTTCCCTTGGAGAACTACGCTAGACTAATGTAGGATGGTGCCGGCGGTACAC a R A R G R G A A G E E Q A ? ? ? ? G N L L M R S D Y I L P R P P C D - b G P E G G G L L G R S R P ? ? ? K G T S * C D L I T S Y H G R H V - c G Q R E G G C W G G A G P ? ? ? R E P L D A I * L H P T T A A M * - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d P W L S P P Q Q P P A P G ? ? ? L S G R S A I Q N C G V V A A M H - e P G S P P P S S P L L L G ? ? L ? P V E Q H S R I V D * W P R W T - f A L P L P A A P S S C A ? L ? ? P F R K I R D S * M R G R G G H - EcoRV EcoRI BsaBI | PstI|Bpu1102I EagI BsaXI | | || | | | ATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACTGTATGCAAACAGGAGTCTTTGTAAACTGCTCATGGGTGATGGTGAAGGTGCTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGACATACGTTTGTCCTCAGAAACATTTGACGAGTACCCACTACCACTTCCACGAA a G Y L Q N S A * R G R G R G T V C K Q E S L * T A H G * W * R C F - b M D I C R I R L S V V A A E V L Y A N R S L C K L L M G D G E G A L - c W I S A E F G L A W S R P R Y C M Q T G V F V N C S W V M V K V L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d H I D A S N P K A H D R G L Y Q I C V P T K T F Q E H T I T F T S - e I S I Q L I R S L T T A A S T S Y A F L L R Q L S S M P S P S P A - f S P Y R C F E A * R P R P R P V T H L C S D K Y V A * P H H H L H K - BsmI BsgI HindIII Bce83I AceIII | | | | | TGTCAGATGCTCTCAGGTGCAGAATGCTGCGGCCTGATTGTGCAAAAGCTTGCTACCGTCAAGCCACAGCTCACATGCTACTCAAGGAGTATAAACAAGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 ACAGTCTACGAGAGTCCACGTCTTACGACGCCGGACTAACACGTTTTCGAACGATGGCAGTTCGGTGTCGAGTGTACGATGAGTTCCTCATATTTGTTCG a V R C S Q V Q N A A A * L C K S L L P S S H S S H A T Q G V * T S - b S D A L R C R M L R P D C A K A C Y R Q A T A H M L L K E Y K Q A - c C Q M L S G A E C C G L I V Q K L A T V K P Q L T C Y S R S I N K P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d Q * I S E P A S H Q P R I T C F S A V T L G C S V H * E L L I F L - e K D S A R L H L I S R G S Q A F A Q * R * A V A * M S S L S Y L C A - f T L H E * T C F A A A Q N H L L K S G D L W L E C A V * P T Y V L - BamHI BsmI RcaI EcoNI | | | | CTGTCATGCTCTCTTGGATGCACAAAAGCTGGATCCTGGGAATGCTGAAATTGAGCGTGAACTGCGGAAGGCTAGGGAACTCATGAAGAATCATCCTGCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GACAGTACGAGAGAACCTACGTGTTTTCGACCTAGGACCCTTACGACTTTAACTCGCACTTGACGCCTTCCGATCCCTTGAGTACTTCTTAGTAGGACGA a L S C S L G C T K A G S W E C * N * A * T A E G * G T H E E S S C * - b C H A L L D A Q K L D P G N A E I E R E L R K A R E L M K N H P A - c V M L S W M H K S W I L G M L K L S V N C G R L G N S * R I I L L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G T M S E Q I C L L Q I R P I S F N L T F Q P L S P F E H L I M R S - e Q * A R K S A C F S S G P F A S I S R S S R F A L S S M F F * G A - f R D H E R P H V F A P D Q S H Q F Q A H V A S P * P V * S S D D Q - ApaBI BsbI BspLU11I | Eco57I BsgI| PstI | | | || | | | GAAGGCGTGCAGTGAAAGGCGTGCATGTGTTGAACTGCAGGCTGCAACATGTGCCGGTTCTTACTAAAAGTGGAGTCAGCATCAACTTCTAATCCTTGTG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CTTCCGCACGTCACTTTCCGCACGTACACAACTTGACGTCCGACGTTGTACACGGCCAAGAATGATTTTCACCTCAGTCGTAGTTGAAGATTAGGAACAC a R R A V K G V H V L N C R L Q H V P V L T K S G V S I N F * S L C - b E G V Q * K A C M C * T A G C N M C R F L L K V E S A S T S N P C V - c K A C S E R R A C V E L Q A A T C A G S Y * K W S Q H Q L L I L V - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d F A H L S L R A H T S S C A A V H A P E * * F H L * C * S R I R T - e S P T C H F A H M H Q V A P Q L M H R N K S F T S D A D V E L G Q - f Q L R A T F P T C T N F Q L S C C T G T R V L L P T L M L K * D K H - NruI DrdII Eco57I |BbsI Bpu10I MscI | | | | | | TTTTTTATTTGAACCAAAAGGCTGAAACGTGTCGCGAATGTTGCGTCTTCAGATTGCTAAGGAGATGAGATTTTCTTGTCTGGCCCTTGGATCATAGTGG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AAAAAATAAACTTGGTTTTCCGACTTTGCACAGCGCTTACAACGCAGAAGTCTAACGATTCCTCTACTCTAAAAGAACAGACCGGGAACCTAGTATCACC a F L F E P K G * N V S R M L R L Q I A K E M R F S C L A L G S * W - b F Y L N Q K A E T C R E C C V F R L L R R * D F L V W P L D H S G - c F F I * T K R L K R V A N V A S S D C * G D E I F L S G P W I I V A - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d N K I Q V L L S F R T A F T A D E S Q * P S S I K K D P G Q I M T - e T K * K F W F A S V H R S H Q T K L N S L L H S K R T Q G K S * L P - f K K N S G F P Q F T D R I N R R * I A L S I L N E Q R A R P D Y H - BclI Bst1107I AlwNI RcaI | BsaI | | | | | | CCAGTTCCTTTTGCTTTTGGATGAGTATGTATGCAATTCCAATTATCCAGTTTCTGTGCAAGGCTTCTTATCTTTCATGATCACTCGGTCTCTCAGGTAT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GGTCAAGGAAAACGAAAACCTACTCATACATACGTTAAGGTTAATAGGTCAAAGACACGTTCCGAAGAATAGAAAGTACTAGTGAGCCAGAGAGTCCATA a P V P F A F G * V C M Q F Q L S S F C A R L L I F H D H S V S Q V Y - b Q F L L L L D E Y V C N S N Y P V S V Q G F L S F M I T R S L R Y - c S S F C F W M S M Y A I P I I Q F L C K A S Y L S * S L G L S G I - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d A L E K Q K Q I L I Y A I G I I W N R H L A E * R E H D S P R E P I - e W N R K S K S S Y T H L E L * G T E T C P K K D K M I V R D R L Y - f G T G K A K P H T H I C N W N D L K Q A L S R I K * S * E T E * T - BspMI BsrGI BpmI SmaI | DrdII | KpnI| SrfI | | | || | | ACAAGTAGGGTGGATTATTGTGTCTGGTTCTTGTACATTTCCCTCAAATAAGAGCATATTTTTGCGGTACCTGCCCGGGCCTACTCTCCAGCCCTCCTTT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TGTTCATCCCACCTAATAACACAGACCAAGAACATGTAAAGGGAGTTTATTCTCGTATAAAAACGCCATGGACGGGCCCGGATGAGAGGTCGGGAGGAAA a K * G G L L C L V L V H F P Q I R A Y F C G T C P G L L S S P P L - b T S R V D Y C V W F L Y I S L K * E H I F A V P A R A Y S P A L L Y - c Q V G W I I V S G S C T F P S N K S I F L R Y L P G P T L Q P S F - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d C T P H I I T D P E Q V N G E F L L M N K R Y R G P G V R W G E K - e V L L T S * Q T Q N K Y M E R L Y S C I K A T G A R A * E G A R R - f Y L Y P P N N H R T R T C K G * I L A Y K Q P V Q G P R S E L G G K - BsbI XmnI | | ACAGCTTCCCCCTAATCGACTGTTGAAGAAAAACGGTGTTGAATCCCGGCCATTCCCTTTCAATTTACCCTTTGAATTTCTTCCCTATGGACGCTTCTCT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TGTCGAAGGGGGATTAGCTGACAACTTCTTTTTGCCACAACTTAGGGCCGGTAAGGGAAAGTTAAATGGGAAACTTAAAGAAGGGATACCTGCGAAGAGA a Q L P P N R L L K K N G V E S R P F P F N L P F E F L P Y G R F S - b S F P L I D C * R K T V L N P G H S L S I Y P L N F F P M D A S L - c T A S P * S T V E E K R C * I P A I P F Q F T L * I S S L W T L L S - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d V A E G * D V T S S F R H Q I G A M G K * N V R Q I E E R H V S R - e * L K G R I S Q Q L F V T N F G P W E R E I * G K F K K G I S A E R - f C S G G L R S N F F F P T S D R G N G K L K G K S N R G * P R K E - BsrDI EarI | | CTGGTACGCTACTCATTGCGTCGCAGCCCTAACTCCTTAACCCTCATAACTCTTCCTT 901 ---------+---------+---------+---------+---------+-------- 958 GACCATGCGATGAGTAACGCAGCGTCGGGATTGAGGAATTGGGAGTATTGAGAAGGAA a L V R Y S L R R S P N S L T L I T L P - b W Y A T H C V A A L T P * P S * L F L - c G T L L I A S Q P * L L N P H N S S - 901 ---------+---------+---------+---------+---------+-------- 958 d E P V S S M A D C G * S R L G * L E E K - e Q Y A V * Q T A A R V G * G E Y S K R - f R T R * E N R R L G L E K V R M V R G - Enzymes that do cut: AceIII AlwNI ApaBI BamHI BbsI Bce83I BclI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BseRI BsgI BsmI BspLU11I BspMI BsrDI BsrGI Bst1107I DrdII EagI EarI Eco57I EcoNI EcoRI EcoRV HindIII KpnI MscI NruI PflMI PstI RcaI SmaI SrfI XmnI Enzymes that do not cut: AatII AflII AhdI ApaI ApaLI AscI AvrII BcgI BfiI BglI BglII BplI BsiWI BsmBI BspEI BspGI BsrBI BssHII BssSI BstEII BstXI Bsu36I ClaI DraI DraIII DrdI EciI Eco47III FseI FspI HgiEII HpaI MfeI MluI NarI NcoI NdeI NgoAIV NheI NotI NsiI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SpeI SphI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI