(Linear) MAP of: ./Fgr-S_9_C06_T7.seq check: 6402 from: 1 to: 871 Fgr-S_9_C06_T7 871 1 648 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. XhoI EagI EcoRV XbaI SphI| NotI BsaBI | EcoRI ApaI | NsiI ||BsrBI| BstXI | | PstI|Bpu1102I EagI | | | || || | | | || | | GAATTGGGCCCTCTAGATGCATGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACTGTATGCAAAC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAACCCGGGAGATCTACGTACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGACATACGTTTG a E L G P L D A C S S G R Q C D G Y L Q N S A * R G R G R G T V C K Q - b N W A L * M H A R A A A S V M D I C R I R L S V V A A E V L Y A N - c I G P S R C M L E R P P V * W I S A E F G L A W S R P R Y C M Q T - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d I P G E L H M S S R G G T H H I D A S N P K A H D R G L Y Q I C V - e F Q A R * I C A R A A A L T I S I Q L I R S L T T A A S T S Y A F - f N P G R S A H E L P R W H S P Y R C F E A * R P R P R P V T H L - BsaXI BsmI BsgI HindIII | | | | AGGAGTCTTTGTAAACTGCTCATGGGTGATGGTGAAGGTGCTTTGTCAGATGCTCTCAGGTGCAGAATGCTGCGGCCTGATTGTGCAAAAGCTTGCTACC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TCCTCAGAAACATTTGACGAGTACCCACTACCACTTCCACGAAACAGTCTACGAGAGTCCACGTCTTACGACGCCGGACTAACACGTTTTCGAACGATGG a E S L * T A H G * W * R C F V R C S Q V Q N A A A * L C K S L L P - b R S L C K L L M G D G E G A L S D A L R C R M L R P D C A K A C Y R - c G V F V N C S W V M V K V L C Q M L S G A E C C G L I V Q K L A T - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d P T K T F Q E H T I T F T S Q * I S E P A S H Q P R I T C F S A V - e L L R Q L S S M P S P S P A K D S A R L H L I S R G S Q A F A Q * - f C S D K Y V A * P H H H L H K T L H E * T C F A A A Q N H L L K S G - Bce83I AceIII BamHI BsmI | | | | GTCAAGCCACAGCTCACATGCTACTCAAGGAGTATAAACAAGCCTGTCATGCTCTCTTGGATGCACAAAAGCTGGATCCTGGGAATGCTGAAATTGAGCG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CAGTTCGGTGTCGAGTGTACGATGAGTTCCTCATATTTGTTCGGACAGTACGAGAGAACCTACGTGTTTTCGACCTAGGACCCTTACGACTTTAACTCGC a S S H S S H A T Q G V * T S L S C S L G C T K A G S W E C * N * A - b Q A T A H M L L K E Y K Q A C H A L L D A Q K L D P G N A E I E R - c V K P Q L T C Y S R S I N K P V M L S W M H K S W I L G M L K L S V - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d T L G C S V H * E L L I F L G T M S E Q I C L L Q I R P I S F N L - e R * A V A * M S S L S Y L C A Q * A R K S A C F S S G P F A S I S R - f D L W L E C A V * P T Y V L R D H E R P H V F A P D Q S H Q F Q A - ApaBI BspLU11I | RcaI EcoNI Eco57I BsbI PstI | | | | | | | | | TGAACTGCGGAAGGCTAGGGAACTCATGAAGAATCATCCTGCTGAAGGCGAGCAGTGAAGGGCGTGCATGTGTTGAACTGCAGGCTGCAACATGTGCCGG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 ACTTGACGCCTTCCGATCCCTTGAGTACTTCTTAGTAGGACGACTTCCGCTCGTCACTTCCCGCACGTACACAACTTGACGTCCGACGTTGTACACGGCC a * T A E G * G T H E E S S C * R R A V K G V H V L N C R L Q H V P V - b E L R K A R E L M K N H P A E G E Q * R A C M C * T A G C N M C R - c N C G R L G N S * R I I L L K A S S E G R A C V E L Q A A T C A G - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d T F Q P L S P F E H L I M R S F A L L S P R A H T S S C A A V H A P - e S S R F A L S S M F F * G A S P S C H L A H M H Q V A P Q L M H R - f H V A S P * P V * S S D D Q Q L R A T F P T C T N F Q L S C C T G - NruI DrdII Eco57I |BbsI Bpu10I | | | | | TTCTTACTAAAAGTGGAGTCAGCATCAACTTCTAATCCTTGTGTTTTTTATTTGAACCAAAAGGCTGAAACGTGTCGCGAATGTTGCGTCTTCAGATTGC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AAGAATGATTTTCACCTCAGTCGTAGTTGAAGATTAGGAACACAAAAAATAAACTTGGTTTTCCGACTTTGCACAGCGCTTACAACGCAGAAGTCTAACG a L T K S G V S I N F * S L C F L F E P K G * N V S R M L R L Q I A - b F L L K V E S A S T S N P C V F Y L N Q K A E T C R E C C V F R L L - c S Y * K W S Q H Q L L I L V F F I * T K R L K R V A N V A S S D C - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d E * * F H L * C * S R I R T N K I Q V L L S F R T A F T A D E S Q - e N K S F T S D A D V E L G Q T K * K F W F A S V H R S H Q T K L N - f T R V L L P T L M L K * D K H K K N S G F P Q F T D R I N R R * I A - MscI AlwNI | | TAAGGAGATGAGATTTTCTTGTCTGGCCCTTGGATCATAGTGGCCAGTTCCTTTTGCTTTTGGATGAGTATGTATGCAATTCCAATTATCCAGTTTCTGT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 ATTCCTCTACTCTAAAAGAACAGACCGGGAACCTAGTATCACCGGTCAAGGAAAACGAAAACCTACTCATACATACGTTAAGGTTAATAGGTCAAAGACA a K E M R F S C L A L G S * W P V P F A F G * V C M Q F Q L S S F C - b R R * D F L V W P L D H S G Q F L L L L D E Y V C N S N Y P V S V - c * G D E I F L S G P W I I V A S S F C F W M S M Y A I P I I Q F L C - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d * P S S I K K D P G Q I M T A L E K Q K Q I L I Y A I G I I W N R - e S L L H S K R T Q G K S * L P W N R K S K S S Y T H L E L * G T E T - f L S I L N E Q R A R P D Y H G T G K A K P H T H I C N W N D L K Q - BclI Bst1107I BsrGI RcaI | BsaI | DrdII | | | | | | | GCAAGGCTTCTTATCTTTCATGATCACTCGGTCTCTCAGGTATACAAGTANGGTGGATTATTGTGTCTGGTTCTTGTACATTTCCCTCAAATAAGAGCAT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CGTTCCGAAGAATAGAAAGTACTAGTGAGCCAGAGAGTCCATATGTTCATNCCACCTAATAACACAGACCAAGAACATGTAAAGGGAGTTTATTCTCGTA a A R L L I F H D H S V S Q V Y K ? G G L L C L V L V H F P Q I R A Y - b Q G F L S F M I T R S L R Y T S ? V D Y C V W F L Y I S L K * E H - c K A S Y L S * S L G L S G I Q V ? W I I V S G S C T F P S N K S I - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d H L A E * R E H D S P R E P I C T ? H I I T D P E Q V N G E F L L M - e C P K K D K M I V R D R L Y V L ? T S * Q T Q N K Y M E R L Y S C - f A L S R I K * S * E T E * T Y L Y P P N N H R T R T C K G * I L A - EagI NotI BglI| BspMI|| SmaI ||| KpnI SrfI |||BsrBI BstXI EagI SpeI BamHI HindIII | | ||| | | | | | | ATTTTTGCGGTACCTGCCCGGGCGGCCGCTCGAAAGCCGAATCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTNCGTACAAGCTTGGCGTATCA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TAAAAACGCCATGGACGGGCCCGCCGGCGAGCTTTCGGCTTAGGTCGTGTGACCGCCGGCAATGATCACCTAGGCTCGANGCATGTTCGAACCGCATAGT a F C G T C P G G R S K A E S S T L A A V T S G S E L R T S L A Y H - b I F A V P A R A A A R K P N P A H W R P L L V D P S ? V Q A W R I M - c F L R Y L P G R P L E S R I Q H T G G R Y * W I R A ? Y K L G V S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d N K R Y R G P R G S S L R I W C V P P R * * H I R A ? Y L S P T D - e I K A T G A R A A A R F G F G A C Q R G N S T S G L ? T C A Q R I - f Y K Q P V Q G P P R E F A S D L V S A A T V L P D S S R V L K A Y * - TGGTCATAGCTGTNTCCTGTGTGAAATGTTATCCGGTCACATTTCCCACACATACGAGCCGGAGCATTAAG 801 ---------+---------+---------+---------+---------+---------+---------+- 871 ACCAGTATCGACANAGGACACACTTTACAATAGGCCAGTGTAAAGGGTGTGTATGCTCGGCCTCGTAATTC a G H S C ? L C E M L S G H I S H T Y E P E H * - b V I A V S C V K C Y P V T F P T H T S R S I K - c W S * L ? P V * N V I R S H F P H I R A G A L - 801 ---------+---------+---------+---------+---------+---------+---------+- 871 d H D Y S ? G T H F T I R D C K G C M R A P A N L - e M T M A T ? Q T F H * G T V N G V C V L R L M L - f P * L Q ? R H S I N D P * M E W V Y S G S C * - Enzymes that do cut: AceIII AlwNI ApaI ApaBI BamHI BbsI Bce83I BclI BglI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BsgI BsmI BspLU11I BspMI BsrBI BsrGI Bst1107I BstXI DrdII EagI Eco57I EcoNI EcoRI EcoRV HindIII KpnI MscI NotI NruI NsiI PstI RcaI SmaI SpeI SphI SrfI XbaI XhoI Enzymes that do not cut: AatII AflII AhdI ApaLI AscI AvrII BcgI BfiI BglII BplI BpmI BseRI BsiWI BsmBI BspEI BspGI BsrDI BssHII BssSI BstEII Bsu36I ClaI DraI DraIII DrdI EarI EciI Eco47III FseI FspI HgiEII HpaI MfeI MluI NarI NcoI NdeI NgoAIV NheI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XcmI XmnI