(Linear) MAP of: ./Fgr-S_9_C07_T7.seq check: 7658 from: 1 to: 830 Fgr-S_9_C07_T7 830 2 661 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. EagI NotI EcoRV XbaI BsrBI| BsaBI | EcoRI ApaI | XhoI || BstXI | | PstI|Bpu1102I EagI | | | || | | | || | | GAATTGGGCCCTCTAGATGCTGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTACTGTATGCAAACA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAACCCGGGAGATCTACGACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCATGACATACGTTTGT a E L G P L D A A R A A A S V M D I C R I R L S V V A A E V L Y A N R - b N W A L * M L L E R P P V * W I S A E F G L A W S R P R Y C M Q T - c I G P S R C C S S G R Q C D G Y L Q N S A * R G R G R G T V C K Q - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P G R S A A R A A A L T I S I Q L I R S L T T A A S T S Y A F - e I P G E L H Q E L P R W H S P Y R C F E A * R P R P R P V T H L C - f F Q A R * I S S S R G G T H H I D A S N P K A H D R G L Y Q I C V - BsaXI BsmI BsgI HindIII | | | | GGAGTCTTTGTAAACTGCTCATGGGTGATGGTGAAGGTGCTTTGTCAGATGCTCTCAGGTGCAGAATGCTGCGGCCTGATTGTGCAAAAGCTTGCTACCG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CCTCAGAAACATTTGACGAGTACCCACTACCACTTCCACGAAACAGTCTACGAGAGTCCACGTCTTACGACGCCGGACTAACACGTTTTCGAACGATGGC a S L C K L L M G D G E G A L S D A L R C R M L R P D C A K A C Y R - b G V F V N C S W V M V K V L C Q M L S G A E C C G L I V Q K L A T V - c E S L * T A H G * W * R C F V R C S Q V Q N A A A * L C K S L L P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d L L R Q L S S M P S P S P A K D S A R L H L I S R G S Q A F A Q * R - e S D K Y V A * P H H H L H K T L H E * T C F A A A Q N H L L K S G - f P T K T F Q E H T I T F T S Q * I S E P A S H Q P R I T C F S A V - Bce83I AceIII BamHI BsmI | | | | TCAAGCCACAGCTCACATGCTACTCAAGGAGTATAAACAAGCCTGTCATGCTCTCTTGGATGCACAAAAGCTGGATCCTGGGAATGCTGAAATTGAGCGT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGTTCGGTGTCGAGTGTACGATGAGTTCCTCATATTTGTTCGGACAGTACGAGAGAACCTACGTGTTTTCGACCTAGGACCCTTACGACTTTAACTCGCA a Q A T A H M L L K E Y K Q A C H A L L D A Q K L D P G N A E I E R - b K P Q L T C Y S R S I N K P V M L S W M H K S W I L G M L K L S V - c S S H S S H A T Q G V * T S L S C S L G C T K A G S W E C * N * A * - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d * A V A * M S S L S Y L C A Q * A R K S A C F S S G P F A S I S R - e D L W L E C A V * P T Y V L R D H E R P H V F A P D Q S H Q F Q A - f T L G C S V H * E L L I F L G T M S E Q I C L L Q I R P I S F N L T - ApaBI BspLU11I | RcaI EcoNI Eco57I BsbI PstI | | | | | | | | | GAACTGCGGAAGGCTAGGGAACTCATGAAGAATCATCCTGCTGAAGGCGAGCAGTGAAGGGCGTGCATGTGTTGAACTGCAGGCTGCAACATGTGCCGGT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CTTGACGCCTTCCGATCCCTTGAGTACTTCTTAGTAGGACGACTTCCGCTCGTCACTTCCCGCACGTACACAACTTGACGTCCGACGTTGTACACGGCCA a E L R K A R E L M K N H P A E G E Q * R A C M C * T A G C N M C R F - b N C G R L G N S * R I I L L K A S S E G R A C V E L Q A A T C A G - c T A E G * G T H E E S S C * R R A V K G V H V L N C R L Q H V P V - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S S R F A L S S M F F * G A S P S C H L A H M H Q V A P Q L M H R - e H V A S P * P V * S S D D Q Q L R A T F P T C T N F Q L S C C T G T - f F Q P L S P F E H L I M R S F A L L S P R A H T S S C A A V H A P - NruI DrdII Eco57I |BbsI Bpu10I | | | | | TCTTACTAAAAGTGGAGTCAGCATCAACTTCTAATCCTTGTGTTTTTTATTTGAACCAAAAGGCTGAAACGTGTCGCGAATGTTGCGTCTTCAGATTGCT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AGAATGATTTTCACCTCAGTCGTAGTTGAAGATTAGGAACACAAAAAATAAACTTGGTTTTCCGACTTTGCACAGCGCTTACAACGCAGAAGTCTAACGA a L L K V E S A S T S N P C V F Y L N Q K A E T C R E C C V F R L L - b S Y * K W S Q H Q L L I L V F F I * T K R L K R V A N V A S S D C * - c L T K S G V S I N F * S L C F L F E P K G * N V S R M L R L Q I A - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d N K S F T S D A D V E L G Q T K * K F W F A S V H R S H Q T K L N S - e R V L L P T L M L K * D K H K K N S G F P Q F T D R I N R R * I A - f E * * F H L * C * S R I R T N K I Q V L L S F R T A F T A D E S Q - MscI AlwNI | | AAGGAGATGAGATTTTCTTGTCTGGCCCTTGGATCATAGTGGCCAGTTCCTTTTGCTTTTGGATGAGTATGTATGCAATTCCAATTATCCAGTTTCTGTG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TTCCTCTACTCTAAAAGAACAGACCGGGAACCTAGTATCACCGGTCAAGGAAAACGAAAACCTACTCATACATACGTTAAGGTTAATAGGTCAAAGACAC a R R * D F L V W P L D H S G Q F L L L L D E Y V C N S N Y P V S V - b G D E I F L S G P W I I V A S S F C F W M S M Y A I P I I Q F L C - c K E M R F S C L A L G S * W P V P F A F G * V C M Q F Q L S S F C A - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L L H S K R T Q G K S * L P W N R K S K S S Y T H L E L * G T E T - e L S I L N E Q R A R P D Y H G T G K A K P H T H I C N W N D L K Q - f * P S S I K K D P G Q I M T A L E K Q K Q I L I Y A I G I I W N R H - BclI Bst1107I BsrGI RcaI | BsaI | DrdII | | | | | | | CAAGGCTTCTTATCTTTCATGATCACTCGGTCTCTCAGGTATACAAGTAGGGTGGATTATTGTGTCTGGTTCTTGTACATCTCCCTCAATAAGAGCATAT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GTTCCGAAGAATAGAAAGTACTAGTGAGCCAGAGAGTCCATATGTTCATCCCACCTAATAACACAGACCAAGAACATGTAGAGGGAGTTATTCTCGTATA a Q G F L S F M I T R S L R Y T S R V D Y C V W F L Y I S L N K S I F - b K A S Y L S * S L G L S G I Q V G W I I V S G S C T S P S I R A Y - c R L L I F H D H S V S Q V Y K * G G L L C L V L V H L P Q * E H I - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d C P K K D K M I V R D R L Y V L L T S * Q T Q N K Y M E R L L L M - e A L S R I K * S * E T E * T Y L Y P P N N H R T R T C R G * Y S C I - f L A E * R E H D S P R E P I C T P H I I T D P E Q V D G E I L A Y - BspMI SmaI | BfiI HindIII KpnI SrfI | EcoRI BstXI |EagI SpeI BamHI SacI KpnI | | | | | | | | | | | | | TTTTGCGGTACCTGCCCGGGCGGGCGCTCGAAAGCCGAATTCCAGCACACTGGGCGGCCGTTACTAGTGGGATCCGAGCTCGGTACCAAGCTTGGGCGTA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AAAACGCCATGGACGGGCCCGCCCGCGAGCTTTCGGCTTAAGGTCGTGTGACCCGCCGGCAATGATCACCCTAGGCTCGAGCCATGGTTCGAACCCGCAT a L R Y L P G R A L E S R I P A H W A A V T S G I R A R Y Q A W A * - b F C G T C P G G R S K A E F Q H T G R P L L V G S E L G T K L G R N - c F A V P A R A G A R K P N S S T L G G R Y * W D P S S V P S L G V - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d N K R Y R G P R A S S L R I G A C Q A A T V L P I R A R Y W A Q A Y - e K A T G A R A P A R F G F E L V S P P R * * H S G L E T G L K P T - f K Q P V Q G P P R E F A S N W C V P R G N S T P D S S P V L S P R - ATCATGGTCATAGCTNGTTCCTGTGTGAAT 801 ---------+---------+---------+ 830 TAGTACCAGTATCGANCAAGGACACACTTA a S W S * L V P V * - b H G H S ? F L C E - c I M V I A ? S C V N - 801 ---------+---------+---------+ 830 d D H D Y S T G T H I - e I M T M A ? E Q T F - f L * P * L ? N R H S - Enzymes that do cut: AceIII AlwNI ApaI ApaBI BamHI BbsI Bce83I BclI BfiI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BsgI BsmI BspLU11I BspMI BsrBI BsrGI Bst1107I BstXI DrdII EagI Eco57I EcoNI EcoRI EcoRV HindIII KpnI MscI NotI NruI PstI RcaI SacI SmaI SpeI SrfI XbaI XhoI Enzymes that do not cut: AatII AflII AhdI ApaLI AscI AvrII BcgI BglI BglII BplI BpmI BseRI BsiWI BsmBI BspEI BspGI BsrDI BssHII BssSI BstEII Bsu36I ClaI DraI DraIII DrdI EarI EciI Eco47III FseI FspI HgiEII HpaI MfeI MluI NarI NcoI NdeI NgoAIV NheI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RsrII SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XcmI XmnI