(Linear) MAP of: ./Fgr-S_9_F06_T7.seq check: 5282 from: 1 to: 881 Fgr-S_9_F06_T7 881 1 580 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 30, 2001 22:34 .. XhoI EagI EcoRV XbaI SphI| NotI BsaBI | EcoRI ApaI | NsiI ||BsrBI| BstXI | | PstI|Bpu1102I EagI BbsI | | | || || | | | || | | | GAATTGGGCCCTCTAGATGCATGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTAGCGTGGTCGCGGCCGAGGTGAGGAAGACAGGT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAACCCGGGAGATCTACGTACGAGCTCGCCGGCGGTCACACTACCTATAGACGTCTTAAGCCGAATCGCACCAGCGCCGGCTCCACTCCTTCTGTCCA a E L G P L D A C S S G R Q C D G Y L Q N S A * R G R G R G E E D R Y - b N W A L * M H A R A A A S V M D I C R I R L S V V A A E V R K T G - c I G P S R C M L E R P P V * W I S A E F G L A W S R P R * G R Q V - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P G R S A H E L P R W H S P Y R C F E A * R P R P R P S S S L - e I P G E L H M S S R G G T H H I D A S N P K A H D R G L H P L C T - f F Q A R * I C A R A A A L T I S I Q L I R S L T T A A S T L F V P - SacI BsgI | | ATGGGAACTCAACCGTGGTGGAGAACACCGAGAAAGGCTGGAAAGAGCTCATCTTCCAGAGGATACGTGCAGTGTTCGGTTTTGGGGTCTGAAAAAGCAT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TACCCTTGAGTTGGCACCACCTCTTGTGGCTCTTTCCGACCTTTCTCGAGTAGAAGGTCTCCTATGCACGTCACAAGCCAAAACCCCAGACTTTTTCGTA a G N S T V V E N T E K G W K E L I F Q R I R A V F G F G V * K S I - b M G T Q P W W R T P R K A G K S S S S R G Y V Q C S V L G S E K A S - c W E L N R G G E H R E R L E R A H L P E D T C S V R F W G L K K H - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d Y P F E V T T S F V S F P Q F S S M K W L I R A T N P K P T Q F L M - e H S S L R P P S C R S L S S L A * R G S S V H L T R N Q P R F F C - f I P V * G H H L V G L F A P F L E D E L P Y T C H E T K P D S F A - CTTTGAGATCCATCTTCAATGAAGTCGATCCTGCCTTTTCATGGCTATCCATGTTTTGCTGTCTTAGTTTATTCGATGCTGATAGACACACAAAACTTAG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GAAACTCTAGGTAGAAGTTACTTCAGCTAGGACGGAAAAGTACCGATAGGTACAAAACGACAGAATCAAATAAGCTACGACTATCTGTGTGTTTTGAATC a F E I H L Q * S R S C L F M A I H V L L S * F I R C * * T H K T * - b L R S I F N E V D P A F S W L S M F C C L S L F D A D R H T K L S - c L * D P S S M K S I L P F H G Y P C F A V L V Y S M L I D T Q N L V - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d K S I W R * H L R D Q R K M A I W T K S D * N I R H Q Y V C L V * - e R Q S G D E I F D I R G K * P * G H K A T K T * E I S I S V C F K - f D K L D M K L S T S G A K E H S D M N Q Q R L K N S A S L C V F S L - RcaI | TGAACTTCCGGGAATTGAAAAATACGTGTTACCTTGTATTCATCACGCTGGGTTGTGCTTTGAAGTCGTCACTCATGAAAGTTTGAGCTTGTGACTCATG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 ACTTGAAGGCCCTTAACTTTTTATGCACAATGGAACATAAGTAGTGCGACCCAACACGAAACTTCAGCAGTGAGTACTTTCAAACTCGAACACTGAGTAC a * T S G N * K I R V T L Y S S R W V V L * S R H S * K F E L V T H V - b E L P G I E K Y V L P C I H H A G L C F E V V T H E S L S L * L M - c N F R E L K N T C Y L V F I T L G C A L K S S L M K V * A C D S C - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d H V E P F Q F I R T V K Y E D R Q T T S Q L R * E H F N S S T V * - e T F K R S N F F V H * R T N M V S P Q A K F D D S M F T Q A Q S E H - f S S G P I S F Y T N G Q I * * A P N H K S T T V * S L K L K H S M - BspMI SmaI | NgoAIV KpnI SrfI | | | | | TAGAGGCCGGCGAAAGATGGTCGCTGAGTGACTATTATTTTTGTTCCTTGCGTCTGTATGACATGGTACCTGCCCGGGCGGTCGCTCGAAGCCGAATTGC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ATCTCCGGCCGCTTTCTACCAGCGACTCACTGATAATAAAAACAAGGAACGCAGACATACTGTACCATGGACGGGCCCGCCAGCGAGCTTCGGCTTAACG a E A G E R W S L S D Y Y F C S L R L Y D M V P A R A V A R S R I A - b * R P A K D G R * V T I I F V P C V C M T W Y L P G R S L E A E L Q - c R G R R K M V A E * L L F L F L A S V * H G T C P G G R S K P N C - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d T S A P S L H D S L S * * K Q E K R R Y S M T G A R A T A R L R I A - e L P R R F I T A S H S N N K N R A D T H C P V Q G P P R E F G F Q - f Y L G A F S P R Q T V I I K T G Q T Q I V H Y R G P R D S S A S N - HindIII EcoRV EagI SpeI BamHI SacI KpnI | BsaBI |BsrBI | | | | | | | | | AGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAGATTGATATCCGCTCACA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TCGTGTGACCGCCGGCAATGATCACCTAGGCTCGAGCCATGGTTCGAACCGCATTAGTACCAGTATCGACAAAGGACACACTCTAACTATAGGCGAGTGT a A H W R P L L V D P S S V P S L A * S W S * L F P V * D * Y P L T - b H T G G R Y * W I R A R Y Q A W R N H G H S C F L C E I D I R S Q - c S T L A A V T S G S E L G T K L G V I M V I A V S C V R L I S A H N - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d A C Q R G N S T S G L E T G L K A Y D H D Y S N G T H S Q Y G S V - e L V S A A T V L P D S S P V L S P T I M T M A T E Q T L N I D A * - f C C V P P R * * H I R A R Y W A Q R L * P * L Q K R H S I S I R E C - VspI | ATTCCACACAGCATACTAGCCGGAAGCATACAGTGTAAAGCCTGTGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TAAGGTGTGTCGTATGATCGGCCTTCGTATGTCACATTTCGGACACCACGGATTACTCACTCGATTGAGTGTAATTAACGCAACGCGAGTGACGGGCGAT a I P H S I L A G S I Q C K A C G A * * V S * L T L I A L R S L P A I - b F H T A Y * P E A Y S V K P V V P N E * A N S H * L R C A H C P L - c S T Q H T S R K H T V * S L W C L M S E L T H I N C V A L T A R Y - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d I G C L M S A P L M C H L A Q P A * H T L * S V N I A N R E S G A - e L E V C C V L R F C V T Y L R H H R I L S S V * M L Q T A S V A R * - f N W V A Y * G S A Y L T F G T T G L S H A L E C * N R Q A * Q G S - PvuII VspI Eco47III | | | TCCAGACNGGAAACCTGTCGTGCCAGCTGCATTAATGAATACGCCAACGCGCGGCGAGAAGCGGATTGCGTATTGAGCGCTCTTACGCTTTCTCGCTCAC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AGGTCTGNCCTTTGGACAGCACGGTCGACGTAATTACTTATGCGGTTGCGCGCCGCTCTTCGCCTAACGCATAACTCGCGAGAATGCGAAAGAGCGAGTG a Q T G N L S C Q L H * * I R Q R A A R S G L R I E R S Y A F S L T - b S R ? E T C R A S C I N E Y A N A R R E A D C V L S A L T L S R S L - c P D ? K P V V P A A L M N T P T R G E K R I A Y * A L L R F L A H - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d I W V P F R D H W S C * H I R W R A A L L P N R I S R E * A K E S V - e G S ? F G T T G A A N I F V G V R P S F R I A Y Q A S K R K R A * - f D L ? S V Q R A L Q M L S Y A L A R R S A S Q T N L A R V S E R E - AlwNI PstI AceIII | | | | TGACTCGATGCGCTTGGTCGTTAGGCTGCAGCGAGCCGTGTCAGCTCACTCAGAGGCTGAAATACCGTGATCCCCAGAATC 801 ---------+---------+---------+---------+---------+---------+---------+---------+- 881 ACTGAGCTACGCGAACCAGCAATCCGACGTCGCTCGGCACAGTCGAGTGAGTCTCCGACTTTATGGCACTAGGGGTCTTAG a D S M R L V V R L Q R A V S A H S E A E I P * S P E - b T R C A W S L G C S E P C Q L T Q R L K Y R D P Q N - c * L D A L G R * A A A S R V S S L R G * N T V I P R I - 801 ---------+---------+---------+---------+---------+---------+---------+---------+- 881 d S E I R K T T L S C R A T D A * E S A S I G H D G S D - e Q S S A S P R * A A A L R T L E S L P Q F V T I G L I - f S V R H A Q D N P Q L S G H * S V * L S F Y R S G W F - Enzymes that do cut: AceIII AlwNI ApaI BamHI BbsI Bpu1102I BsaBI BsgI BspMI BsrBI BstXI EagI Eco47III EcoRI EcoRV HindIII KpnI NgoAIV NotI NsiI PstI PvuII RcaI SacI SmaI SpeI SphI SrfI VspI XbaI XhoI Enzymes that do not cut: AatII AflII AhdI ApaBI ApaLI AscI AvrII Bce83I BcgI BclI BfiI BglI BglII BplI BpmI Bpu10I BsaI BsaXI BsbI BseRI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrDI BsrGI BssHII BssSI Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EarI EciI Eco57I EcoNI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NdeI NheI NruI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RsrII SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI Sse8387I Sse8647I SspI StuI SwaI Tth111I XcmI XmnI