BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_A02_T7.seq
(126 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02039.1 NCU02039.1 hypothetical protein ( (AL442164) conserve... 26 1.4
NCU09294.1 NCU09294.1 predicted protein (3037 - 429) 25 3.1
NCU06967.1 NCU06967.1 predicted protein (35250 - 36993) 24 4.1
NCU02310.1 NCU02310.1 predicted protein (2379 - 5279) 24 4.1
NCU07519.1 NCU07519.1 hypothetical protein (27595 - 25196) 24 4.1
NCU09219.1 NCU09219.1 hypothetical protein (119089 - 113132) 24 5.3
NCU08516.1 NCU08516.1 hypothetical protein (14045 - 15386) 23 6.9
NCU08097.1 NCU08097.1 hypothetical protein (160292 - 157654) 23 9.1
NCU09856.1 NCU09856.1 predicted protein (37346 - 33911) 23 9.1
NCU06732.1 NCU06732.1 hypothetical protein (21518 - 23633) 23 9.1
NCU06894.1 NCU06894.1 hypothetical protein (70430 - 68560) 23 9.1
NCU00942.1 NCU00942.1 hypothetical protein (118675 - 116901) 23 9.1
>NCU02039.1 NCU02039.1 hypothetical protein ( (AL442164) conserved
hypothetical protein [Neu
Length = 702
Score = 25.8 bits (55), Expect = 1.4
Identities = 12/39 (30%), Positives = 19/39 (47%)
Frame = -1
Query: 126 PGRCWLSSW*CIQIKFPMAPEKRHSITSWLSFHVTENES 10
PG+ SW +IK RH + W+S+H+T +
Sbjct: 233 PGQLQGDSWVVSEIK-------RHWLCCWISYHITRTNA 264
>NCU09294.1 NCU09294.1 predicted protein (3037 - 429)
Length = 615
Score = 24.6 bits (52), Expect = 3.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 56 WRFSGAIGNLICMHHQLLSQHLP 124
W+F GAI ++ MH LL P
Sbjct: 474 WKFKGAIASVYVMHPPLLGFFRP 496
>NCU06967.1 NCU06967.1 predicted protein (35250 - 36993)
Length = 544
Score = 24.3 bits (51), Expect = 4.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 116 VGSAVGDAYRLSSQWLLKSATPSP 45
+G AVG Y SS LL S P P
Sbjct: 371 IGQAVGRKYSTSSDILLPSPGPPP 394
>NCU02310.1 NCU02310.1 predicted protein (2379 - 5279)
Length = 802
Score = 24.3 bits (51), Expect = 4.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 46 GDGVALFRSHWELNLY 93
GDGVA+F +H +L ++
Sbjct: 427 GDGVAMFEAHADLEIF 442
>NCU07519.1 NCU07519.1 hypothetical protein (27595 - 25196)
Length = 799
Score = 24.3 bits (51), Expect = 4.1
Identities = 13/34 (38%), Positives = 16/34 (46%), Gaps = 2/34 (5%)
Frame = -1
Query: 96 CIQIKFPMAPEKRHSI--TSWLSFHVTENESCLR 1
C + F PEKRHS+ S V E+C R
Sbjct: 28 CTSLLFATQPEKRHSLPPKSERKSRVRRRENCKR 61
>NCU09219.1 NCU09219.1 hypothetical protein (119089 - 113132)
Length = 1838
Score = 23.9 bits (50), Expect = 5.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 72 APEKRHSITSWLSF 31
AP RH + SW+SF
Sbjct: 1025 APSSRHVLDSWISF 1038
>NCU08516.1 NCU08516.1 hypothetical protein (14045 - 15386)
Length = 407
Score = 23.5 bits (49), Expect = 6.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 70 SHWELNLYASPTAEPTP 120
+ W++N+ A PT + TP
Sbjct: 185 NQWDINMVAIPTTKKTP 201
>NCU08097.1 NCU08097.1 hypothetical protein (160292 - 157654)
Length = 836
Score = 23.1 bits (48), Expect = 9.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -1
Query: 51 ITSWLSFHVTE 19
I +WLSFHVT+
Sbjct: 559 IAAWLSFHVTK 569
>NCU09856.1 NCU09856.1 predicted protein (37346 - 33911)
Length = 977
Score = 23.1 bits (48), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 79 ELNLYASPTAEPTPAG 126
EL+LY +PT E P G
Sbjct: 511 ELDLYKAPTGERLPVG 526
>NCU06732.1 NCU06732.1 hypothetical protein (21518 - 23633)
Length = 614
Score = 23.1 bits (48), Expect = 9.1
Identities = 9/21 (42%), Positives = 12/21 (56%)
Frame = -2
Query: 92 YRLSSQWLLKSATPSPLGLVS 30
Y L+ +W K TPSP + S
Sbjct: 472 YELAEKWKSKDFTPSPSDVAS 492
>NCU06894.1 NCU06894.1 hypothetical protein (70430 - 68560)
Length = 585
Score = 23.1 bits (48), Expect = 9.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 62 SATPSPLGLVSMLPKMNP 9
+ATPSP G + P NP
Sbjct: 399 AATPSPFGASTTTPAANP 416
>NCU00942.1 NCU00942.1 hypothetical protein (118675 - 116901)
Length = 451
Score = 23.1 bits (48), Expect = 9.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 70 SHWELNLYASPTAEPTPA 123
+HW NL+AS T PA
Sbjct: 132 AHWNKNLFASYTTNLPPA 149
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 864722
Number of Sequences: 6531
Number of extensions: 12644
Number of successful extensions: 38
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of query: 42
length of database: 3,158,374
effective HSP length: 17
effective length of query: 24
effective length of database: 3,047,347
effective search space: 73136328
effective search space used: 73136328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)