BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_A03_T7.seq
(185 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09434.1 NCU09434.1 hypothetical protein (11030 - 8061) 25 2.3
NCU00942.1 NCU00942.1 hypothetical protein (118675 - 116901) 25 2.3
NCU02039.1 NCU02039.1 hypothetical protein ( (AL442164) conserve... 25 2.3
NCU08701.1 NCU08701.1 related to verrucotoxin alpha [MIPS] (2436... 24 3.9
NCU06894.1 NCU06894.1 hypothetical protein (70430 - 68560) 24 5.1
NCU02369.1 NCU02369.1 hypothetical protein (74051 - 72753) 24 5.1
NCU00091.1 NCU00091.1 hypothetical protein (34376 - 30239) 23 6.6
NCU00379.1 NCU00379.1 predicted protein (52117 - 54132) 23 8.7
NCU08426.1 NCU08426.1 hypothetical protein (234 - 3718) 23 8.7
>NCU09434.1 NCU09434.1 hypothetical protein (11030 - 8061)
Length = 989
Score = 25.0 bits (53), Expect = 2.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 11 GFSPVQKKNSIPP*TGFIFGNMETNP 88
G +P Q +++ PP G+ G M+T P
Sbjct: 46 GAAPGQARSNFPPPLGYDPGKMDTRP 71
>NCU00942.1 NCU00942.1 hypothetical protein (118675 - 116901)
Length = 451
Score = 25.0 bits (53), Expect = 2.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 115 SHWELNLYASPTDEPTPAGG 174
+HW NL+AS T PA G
Sbjct: 132 AHWNKNLFASYTTNLPPAAG 151
>NCU02039.1 NCU02039.1 hypothetical protein ( (AL442164) conserved
hypothetical protein [Neu
Length = 702
Score = 25.0 bits (53), Expect = 2.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 109 KRHSITSWISFHVT 68
KRH + WIS+H+T
Sbjct: 247 KRHWLCCWISYHIT 260
>NCU08701.1 NCU08701.1 related to verrucotoxin alpha [MIPS] (24363 -
20551)
Length = 1270
Score = 24.3 bits (51), Expect = 3.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 138 IQIKFPMALKSATPSPLGLVSMLPK 64
+++K P+ L PSPL SM+ K
Sbjct: 1212 LRLKLPLDLMKKAPSPLRTQSMMSK 1236
>NCU06894.1 NCU06894.1 hypothetical protein (70430 - 68560)
Length = 585
Score = 23.9 bits (50), Expect = 5.1
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -3
Query: 117 ALKSATPSPLGLVSMLPKMNP 55
A +ATPSP G + P NP
Sbjct: 396 AAPAATPSPFGASTTTPAANP 416
>NCU02369.1 NCU02369.1 hypothetical protein (74051 - 72753)
Length = 379
Score = 23.9 bits (50), Expect = 5.1
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +2
Query: 32 KNSIP----P*TGFIFGNMETNPRGDGVALFRAIGNLICMHHQLMSQHLPGGR 178
KN+ P P TGF N+ N G +F G+ C + + GG+
Sbjct: 313 KNASPTNGVPITGFTLSNVTGNVLSSGTNIFINCGDGSCKQFEWNQVDVKGGK 365
>NCU00091.1 NCU00091.1 hypothetical protein (34376 - 30239)
Length = 1103
Score = 23.5 bits (49), Expect = 6.6
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = -2
Query: 118 GSEKRHSITSWISFHVTED 62
G +K HS+ IS+H T D
Sbjct: 365 GEQKTHSVLERISYHQTMD 383
>NCU00379.1 NCU00379.1 predicted protein (52117 - 54132)
Length = 671
Score = 23.1 bits (48), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = -3
Query: 129 KFPMALKSATPSPLGLV 79
++ +ALKS PSP GL+
Sbjct: 488 RYVLALKSQAPSPKGLL 504
>NCU08426.1 NCU08426.1 hypothetical protein (234 - 3718)
Length = 933
Score = 23.1 bits (48), Expect = 8.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 91 R*WSGAFQSHWELNLYASPTDEP 159
R W GA SHW A PT P
Sbjct: 398 REWHGAECSHWMRQQSALPTFSP 420
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1356139
Number of Sequences: 6531
Number of extensions: 24936
Number of successful extensions: 48
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of query: 61
length of database: 3,158,374
effective HSP length: 37
effective length of query: 24
effective length of database: 2,916,727
effective search space: 70001448
effective search space used: 70001448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)