BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_A04_T7.seq
(379 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07496.1 NCU07496.1 hypothetical protein (67709 - 74407) 27 2.1
NCU08611.1 NCU08611.1 hypothetical protein (17167 - 19047) 27 2.7
NCU08688.1 NCU08688.1 predicted protein (6407 - 8396) 26 3.5
NCU01895.1 NCU01895.1 hypothetical protein (130027 - 126598) 26 4.6
>NCU07496.1 NCU07496.1 hypothetical protein (67709 - 74407)
Length = 2140
Score = 26.9 bits (58), Expect = 2.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 310 HGFAGSSSSMNAQEKKGTEDGDGYLTG 230
HG AG + E +G EDGDG G
Sbjct: 1304 HGSAGEDDAEAEAEAEGDEDGDGDANG 1330
>NCU08611.1 NCU08611.1 hypothetical protein (17167 - 19047)
Length = 579
Score = 26.6 bits (57), Expect = 2.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 277 AQEKKGTEDGDGYLTGGGF 221
A E KGT+ D YL GGGF
Sbjct: 248 ADEAKGTQGIDIYLCGGGF 266
>NCU08688.1 NCU08688.1 predicted protein (6407 - 8396)
Length = 600
Score = 26.2 bits (56), Expect = 3.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 155 VRECSFCSLHKDDQVHITSSNPKPTSSEVTITILGALLL 271
+ C + + ++Q TS+ +PT + T+ +L LLL
Sbjct: 66 IASCQVVAANPENQNLTTSTPGRPTRQQFTLAVLACLLL 104
>NCU01895.1 NCU01895.1 hypothetical protein (130027 - 126598)
Length = 1114
Score = 25.8 bits (55), Expect = 4.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +2
Query: 152 TVRECSFCSLHKDDQVHITSSN----PKPTSSEVTITILGALLL 271
+ R S S+H+DD + T++ P PT+S + TI A L
Sbjct: 302 SARVSSLASIHEDDDLAHTAAGDEPLPPPTTSTLATTIDAAATL 345
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2388050
Number of Sequences: 6531
Number of extensions: 48790
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of query: 126
length of database: 3,158,374
effective HSP length: 42
effective length of query: 83
effective length of database: 2,884,072
effective search space: 239377976
effective search space used: 239377976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)