BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_A07_T7.seq
         (324 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU08203.1 NCU08203.1 related to feebly protein [MIPS] (40584 - ...    33  0.022
NCU07114.1 NCU07114.1 predicted protein (70274 - 65972)                27  1.6

>NCU08203.1 NCU08203.1 related to feebly protein [MIPS] (40584 -
           41726)
          Length = 355

 Score = 33.1 bits (74), Expect = 0.022
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 22  WVKTTEGLRDVINRHYPEITANWMRSSSAFSVWD 123
           WV+ + G++DV+ RH+PE+      S + F+ W+
Sbjct: 308 WVQNS-GMKDVLGRHFPELRETLKASKNVFAPWE 340



>NCU07114.1 NCU07114.1 predicted protein (70274 - 65972)
          Length = 1198

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 18/70 (25%), Positives = 27/70 (37%)
 Frame = -1

Query: 303 YNLCHAIMNPITYVTLTYLSIFIYTEQTQ*FCEQMILHRTCQIACTTYGRGPFIFALVVC 124
           Y   + +++P TY+     S    T       E + +HR     CT     PF F L+  
Sbjct: 782 YTAHYRLVSPCTYLITLSGSFTASTYDITSMSESLFVHRDGPETCTWESSFPFSFPLLTD 841

Query: 123 IPHRESTRGP 94
           I   +   GP
Sbjct: 842 IFTADLITGP 851



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1918413
Number of Sequences: 6531
Number of extensions: 35551
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of query: 108
length of database: 3,158,374
effective HSP length: 42
effective length of query: 65
effective length of database: 2,884,072
effective search space: 187464680
effective search space used: 187464680
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)