BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_A08_T7.seq
(643 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07542.1 NCU07542.1 hypothetical protein (79096 - 81351) 28 1.4
NCU00070.1 NCU00070.1 predicted protein (35788 - 32744) 27 3.2
NCU08901.1 NCU08901.1 predicted protein (77321 - 74505) 27 4.2
NCU06564.1 NCU06564.1 predicted protein (79146 - 78634) 27 4.2
NCU07674.1 NCU07674.1 hypothetical protein (58304 - 60296) 27 4.2
NCU09929.1 NCU09929.1 hypothetical protein (32213 - 33132) 27 5.4
NCU01172.1 NCU01172.1 hypothetical protein (53481 - 57094) 27 5.4
NCU01702.1 NCU01702.1 hypothetical protein ( (AL513408) related ... 26 7.1
NCU00962.1 NCU00962.1 hypothetical protein (67582 - 73062) 26 9.3
NCU08662.1 NCU08662.1 predicted protein (48544 - 46307) 26 9.3
NCU01895.1 NCU01895.1 hypothetical protein (130027 - 126598) 26 9.3
>NCU07542.1 NCU07542.1 hypothetical protein (79096 - 81351)
Length = 408
Score = 28.5 bits (62), Expect = 1.4
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = +1
Query: 355 SVPRYRPPGTEPAPRSGPAAGSTVAASTGNRLPA 456
+ P P + PAP + PAA S AA+ PA
Sbjct: 117 ATPAAAAPASTPAPPAAPAASSAAAAAPSTPTPA 150
>NCU00070.1 NCU00070.1 predicted protein (35788 - 32744)
Length = 997
Score = 27.3 bits (59), Expect = 3.2
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Frame = +1
Query: 388 PAPRSGPAAGSTVAASTGNRL--PATSVTGHMLS-GCTAAGKQR 510
PAP PA +T +TG R PA V +S G +A GK++
Sbjct: 704 PAPDKAPAETTTTTRTTGKRTKRPAPGVISRTVSGGNSAVGKRK 747
>NCU08901.1 NCU08901.1 predicted protein (77321 - 74505)
Length = 938
Score = 26.9 bits (58), Expect = 4.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 482 DSICPVTDVAGKRLPVDAATVLPAAGPD 399
+S CP+ AG R P D+ T + PD
Sbjct: 401 ESDCPLPTTAGLRAPTDSTTTILGREPD 428
>NCU06564.1 NCU06564.1 predicted protein (79146 - 78634)
Length = 60
Score = 26.9 bits (58), Expect = 4.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 476 ICPVTDVAGKRLPVDAATVLPAAGPDLG 393
+CP+T + +L V+ + L AAGP+ G
Sbjct: 1 MCPLTQLKDGKLSVEEPSTLSAAGPNEG 28
>NCU07674.1 NCU07674.1 hypothetical protein (58304 - 60296)
Length = 639
Score = 26.9 bits (58), Expect = 4.2
Identities = 12/34 (35%), Positives = 15/34 (43%), Gaps = 7/34 (20%)
Frame = +3
Query: 390 CSEIWASGWQHCCRINWQP-------LACHICDW 470
C E+ AS WQ C ++ P CH DW
Sbjct: 149 CPEMRASEWQFLCAVHDAPKSCCAIDYCCHTLDW 182
>NCU09929.1 NCU09929.1 hypothetical protein (32213 - 33132)
Length = 281
Score = 26.6 bits (57), Expect = 5.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 62 NSSSIN*TVIDLASTSQILAGTTSTGS 142
+S+S + TV+ STS ++ TTST S
Sbjct: 167 SSTSTSSTVVSTTSTSSVVVSTTSTSS 193
>NCU01172.1 NCU01172.1 hypothetical protein (53481 - 57094)
Length = 1147
Score = 26.6 bits (57), Expect = 5.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 376 PGTEPAPRSGPAAGSTVAASTGNRLPATSVTGHMLSGCTAA 498
PG+ R+G AGS + G+R P + T L+G ++A
Sbjct: 1091 PGSRAGSRAGSRAGSRAGSRAGSRAPTPTPT-QTLTGRSSA 1130
>NCU01702.1 NCU01702.1 hypothetical protein ( (AL513408) related to
nucleoporin-interacting
Length = 1161
Score = 26.2 bits (56), Expect = 7.1
Identities = 14/39 (35%), Positives = 17/39 (42%)
Frame = +1
Query: 382 TEPAPRSGPAAGSTVAASTGNRLPATSVTGHMLSGCTAA 498
T AP +G GST AA+TG TG + A
Sbjct: 76 TATAPATGGLFGSTPAATTGTATAQAGTTGGLFGNTGTA 114
>NCU00962.1 NCU00962.1 hypothetical protein (67582 - 73062)
Length = 1789
Score = 25.8 bits (55), Expect = 9.3
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 376 PGTEPAPRSGPAAGSTV--AASTGNRLPATSVTGH 474
PG P P++ AGS V A +GN S+ GH
Sbjct: 1611 PGVTPGPQNAVGAGSAVSGAGGSGNGGSYFSLPGH 1645
>NCU08662.1 NCU08662.1 predicted protein (48544 - 46307)
Length = 593
Score = 25.8 bits (55), Expect = 9.3
Identities = 18/55 (32%), Positives = 25/55 (44%), Gaps = 3/55 (5%)
Frame = +1
Query: 364 RYRPPGTEPAPRSGPAAGSTVAASTGNRLPATSVT--GHMLSGCTAA-GKQRMCS 519
++RPP P + + ST + LPATS T H A+ GKQ+ S
Sbjct: 219 KHRPPSKTTTPTTADGITTPETFSTRSELPATSPTLGTHPADSVKASEGKQKSSS 273
>NCU01895.1 NCU01895.1 hypothetical protein (130027 - 126598)
Length = 1114
Score = 25.8 bits (55), Expect = 9.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 388 PAPRSGPAAGSTVAASTGNRLPATSVTGHMLSG 486
PA G A +T A S + PA+SVT G
Sbjct: 252 PAAAGGAATNATSAKSASGQPPASSVTNRAAPG 284
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3044967
Number of Sequences: 6531
Number of extensions: 49558
Number of successful extensions: 269
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of query: 214
length of database: 3,158,374
effective HSP length: 44
effective length of query: 169
effective length of database: 2,871,010
effective search space: 485200690
effective search space used: 485200690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)