BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_A11_T7.seq
         (464 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU09846.1 NCU09846.1 hypothetical protein (17570 - 21337)             27  2.8
NCU00172.1 NCU00172.1 hypothetical protein (8364 - 11123)              27  2.8

>NCU09846.1 NCU09846.1 hypothetical protein (17570 - 21337)
          Length = 1114

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 353 LGRPDWHGADHD*PLSHQIDKKNLATL 273
           +G PD HG  H+   + QID++N A L
Sbjct: 370 IGVPDGHGCAHEIDRAFQIDQRNHAYL 396



>NCU00172.1 NCU00172.1 hypothetical protein (8364 - 11123)
          Length = 842

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 254 TILDRKLALLGFSCRSDDSMASHDPRH--ASPVSPA*TPG--SGCSARGSTLAS 403
           T  DRK +L  F  RS   M+ H P H   SP  P   P   S  S++G T ++
Sbjct: 26  TAHDRKPSLSSFPPRSVSQMSHHGPAHRSRSPQPPHVEPDRTSTLSSKGKTAST 79



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3228962
Number of Sequences: 6531
Number of extensions: 74280
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of query: 154
length of database: 3,158,374
effective HSP length: 42
effective length of query: 112
effective length of database: 2,884,072
effective search space: 323016064
effective search space used: 323016064
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)