BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_B01_T7.seq
(557 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU06376.1 NCU06376.1 predicted protein (137542 - 135719) 28 1.2
NCU07348.1 NCU07348.1 predicted protein (14650 - 17829) 26 6.0
NCU09295.1 NCU09295.1 predicted protein (4615 - 5676) 26 7.9
NCU09993.1 NCU09993.1 hypothetical protein (33553 - 28016) 26 7.9
NCU10066.1 NCU10066.1 hypothetical protein (93 - 4243) 26 7.9
NCU07114.1 NCU07114.1 predicted protein (70274 - 65972) 26 7.9
>NCU06376.1 NCU06376.1 predicted protein (137542 - 135719)
Length = 564
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = -2
Query: 505 ISLIDPKSISQHFCDIVCKNVLGYLMPFRSLSIELIECILRPLVRPGAPPVREDKSTASK 326
+S++ P + QH C ++ + GY S S E R L+ P +PP S+
Sbjct: 300 LSVVHPTTWQQHPCSLIERRDSGYASDRSSSSAS--ETETRQLIPPSSPPPPPTTSSMPS 357
Query: 325 LAAPFTTSPVSDCKKTSDS 269
+ F+++ + +S S
Sbjct: 358 SRSSFSSTKKARPSSSSSS 376
>NCU07348.1 NCU07348.1 predicted protein (14650 - 17829)
Length = 575
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 291 TAKKLLTLFWTG*NNMRLLSHPR*NNHLNL 202
T K+L TL W G +R + +PR N+ N+
Sbjct: 340 TLKRLGTLLWMGEEQIRSIRNPRSPNYHNV 369
>NCU09295.1 NCU09295.1 predicted protein (4615 - 5676)
Length = 332
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 516 EAVISH*LIQNPSVNTSATSFVRMFWVI*CPSD 418
+A+++ +Q P V TS +R WV+ CP++
Sbjct: 142 DALVTLRHLQTPYVQTSGYVNLRCVWVLGCPAE 174
>NCU09993.1 NCU09993.1 hypothetical protein (33553 - 28016)
Length = 1845
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/38 (28%), Positives = 16/38 (41%)
Frame = -3
Query: 219 NNHLNLCGHHPTKASSSNSHSMLQGYHLPKDDQKDLVN 106
N + GHH + +NS S +H+P D N
Sbjct: 45 NTNGTTTGHHDNNETDNNSKSYSSTHHVPAIDNTSTTN 82
>NCU10066.1 NCU10066.1 hypothetical protein (93 - 4243)
Length = 1223
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 17 AGAPSGTGHRNGGANPKATKK 79
+ AP+G G GGA+ ATKK
Sbjct: 848 SAAPNGLGLEEGGADEPATKK 868
>NCU07114.1 NCU07114.1 predicted protein (70274 - 65972)
Length = 1198
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -3
Query: 138 LPKDDQKDLVNWTGQAQHEHFLVAFGFAPPFLCPVPEGAPARAA 7
+P D W +H LV +PPF CP E P R A
Sbjct: 1140 VPDHDSAPQKVWERIKKH---LVRVAISPPFGCPFVEEPPCRKA 1180
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3162501
Number of Sequences: 6531
Number of extensions: 63201
Number of successful extensions: 262
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of query: 185
length of database: 3,158,374
effective HSP length: 42
effective length of query: 143
effective length of database: 2,884,072
effective search space: 412422296
effective search space used: 412422296
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)