BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_B03_T7.seq
(196 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01157.1 NCU01157.1 hypothetical protein (8050 - 5542) 26 1.3
NCU01369.1 NCU01369.1 hypothetical protein (764 - 2901) 26 1.3
NCU09138.1 NCU09138.1 hypothetical protein (64764 - 65751) 23 6.6
NCU08598.1 NCU08598.1 hypothetical protein (1138 - 8295) 23 8.6
NCU01818.1 NCU01818.1 predicted protein (4192 - 2748) 23 8.6
>NCU01157.1 NCU01157.1 hypothetical protein (8050 - 5542)
Length = 728
Score = 25.8 bits (55), Expect = 1.3
Identities = 16/59 (27%), Positives = 19/59 (32%)
Frame = +2
Query: 8 KKFWF*KGPLIPXXXXXXXXXXQRXXXXXXXXXXXXVLWE*NLPRGALKNPISPPLGPL 184
KKFWF K P P R + P P +PPLGP+
Sbjct: 507 KKFWFRKNP-FPVRTTRRGGSASRSASGT------------STPNSGSSRPATPPLGPV 552
>NCU01369.1 NCU01369.1 hypothetical protein (764 - 2901)
Length = 687
Score = 25.8 bits (55), Expect = 1.3
Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = -1
Query: 181 GPQGGGNWVFK-GPPG 137
GP GGGNW GPPG
Sbjct: 71 GPGGGGNWPAPGGPPG 86
>NCU09138.1 NCU09138.1 hypothetical protein (64764 - 65751)
Length = 310
Score = 23.5 bits (49), Expect = 6.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 123 GNKTSPGGPLKTQFPPP 173
GN P GP FPPP
Sbjct: 157 GNWGGPKGPATQNFPPP 173
>NCU08598.1 NCU08598.1 hypothetical protein (1138 - 8295)
Length = 2330
Score = 23.1 bits (48), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +3
Query: 123 GNKTSPGGPL-KTQFPPPWGP 182
G + GGP+ + Q PPP GP
Sbjct: 273 GGRVGGGGPVQQQQQPPPLGP 293
>NCU01818.1 NCU01818.1 predicted protein (4192 - 2748)
Length = 460
Score = 23.1 bits (48), Expect = 8.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 134 LPRGALKNPISPPLGP 181
LP A NP+ PP GP
Sbjct: 8 LPLPAALNPVPPPSGP 23
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1020472
Number of Sequences: 6531
Number of extensions: 14215
Number of successful extensions: 41
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of query: 65
length of database: 3,158,374
effective HSP length: 40
effective length of query: 24
effective length of database: 2,897,134
effective search space: 69531216
effective search space used: 69531216
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)