BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_B05_T7.seq
(254 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09975.1 NCU09975.1 hypothetical protein (15396 - 19879) 27 0.86
NCU06339.1 NCU06339.1 predicted protein (19631 - 21692) 25 4.3
NCU07736.1 NCU07736.1 hypothetical protein (5521 - 3655) 25 5.6
NCU07521.1 NCU07521.1 hypothetical protein (39231 - 41550) 24 7.3
NCU00827.1 NCU00827.1 predicted protein (57790 - 59025) 24 9.5
>NCU09975.1 NCU09975.1 hypothetical protein (15396 - 19879)
Length = 1177
Score = 27.3 bits (59), Expect = 0.86
Identities = 17/57 (29%), Positives = 28/57 (48%), Gaps = 4/57 (7%)
Frame = +3
Query: 24 KSSNGPLAMECSVIKFLIFCRASTAISVGVS*ETSS*PFL----AASSSKETLTSAY 182
K SNG ++++C ++F R S + GVS F+ A+ S K +L S +
Sbjct: 909 KRSNGAVSIDCQALEFSYPLRPSARVLKGVSINIPPGQFVALVGASGSGKSSLISVF 965
>NCU06339.1 NCU06339.1 predicted protein (19631 - 21692)
Length = 667
Score = 25.0 bits (53), Expect = 4.3
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 16 QFISRRMGHWPWNAQ**NS*SFAGPPQQYQLGLAERHHHDPF*LQALQKKPSHRRMRKHP 195
Q + RR G+W +S P + G ERHHH P+ Q+ H++ ++
Sbjct: 85 QELYRRYGNWGGGCT--SSSPARRPLRTASSGSQERHHHHPY---PNQEHLDHQQQQQRT 139
Query: 196 LFAQR 210
+ ++R
Sbjct: 140 VCSRR 144
>NCU07736.1 NCU07736.1 hypothetical protein (5521 - 3655)
Length = 592
Score = 24.6 bits (52), Expect = 5.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 18 IYKSSNGPLAMECSVIKFLIFCRAST--AISVGVS*ETSS 131
++KS N P+A+ C + L F A+ A VG+ ET +
Sbjct: 318 LFKSRNFPIALVCLFCEGLAFFSANNYFAFQVGILYETDA 357
>NCU07521.1 NCU07521.1 hypothetical protein (39231 - 41550)
Length = 755
Score = 24.3 bits (51), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 81 KRLRILSLSIPWPVAHSTTYKLVPGD 4
+R LS+S PW A STT+ P D
Sbjct: 29 RRGHSLSVSPPWHTAKSTTHNHGPRD 54
>NCU00827.1 NCU00827.1 predicted protein (57790 - 59025)
Length = 411
Score = 23.9 bits (50), Expect = 9.5
Identities = 8/31 (25%), Positives = 15/31 (47%)
Frame = -3
Query: 96 LWRPCKRLRILSLSIPWPVAHSTTYKLVPGD 4
LWR C + ++ + W + +K+ P D
Sbjct: 193 LWRRCPNVEVVEFDLSWSGPGHSFWKVRPHD 223
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1604270
Number of Sequences: 6531
Number of extensions: 28641
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of query: 84
length of database: 3,158,374
effective HSP length: 39
effective length of query: 45
effective length of database: 2,903,665
effective search space: 130664925
effective search space used: 130664925
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)