BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_B06_T7.seq
(360 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02514.1 NCU02514.1 ATP SYNTHASE ALPHA CHAIN, MITOCHONDRIAL PR... 50 3e-07
NCU00681.1 NCU00681.1 hypothetical protein (371203 - 367586) 25 5.5
NCU09888.1 NCU09888.1 predicted protein (53933 - 52442) 22 7.1
>NCU02514.1 NCU02514.1 ATP SYNTHASE ALPHA CHAIN, MITOCHONDRIAL
PRECURSOR (37722 - 35112)
Length = 551
Score = 49.7 bits (117), Expect = 3e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = -3
Query: 175 EIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEG 20
E+ IL +RI + + GRV+ VGDGIAR+ G+ + + ELVEFA G
Sbjct: 48 EVSSILEQRIRGVQEESNLAETGRVLSVGDGIARVHGMANVQAEELVEFASG 99
>NCU00681.1 NCU00681.1 hypothetical protein (371203 - 367586)
Length = 1182
Score = 25.4 bits (54), Expect = 5.5
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = -3
Query: 262 YFRLEFRHYFSPCFRKKSQETLMATLRVDEIHKILRERIEQYNRKVGIENIGRVVQV 92
Y RLE ++ K S + +A +DEI K L + +Y E IGR+ +V
Sbjct: 297 YLRLENPTLYADTLAKHSGKESLA---IDEIEKDLNRSLPEYPGFQSEEGIGRLRRV 350
>NCU09888.1 NCU09888.1 predicted protein (53933 - 52442)
Length = 468
Score = 21.9 bits (45), Expect(2) = 7.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 1 AWSRPRYLLQIRLVHL 48
AW++P YLL I + L
Sbjct: 163 AWTKPAYLLSIIVAEL 178
Score = 21.2 bits (43), Expect(2) = 7.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 107 TYILNPYFPIILF 145
T ++NPY P+ LF
Sbjct: 196 TVVMNPYTPLELF 208
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1852346
Number of Sequences: 6531
Number of extensions: 31996
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of query: 120
length of database: 3,158,374
effective HSP length: 42
effective length of query: 77
effective length of database: 2,884,072
effective search space: 222073544
effective search space used: 222073544
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)