BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_B07_T7.seq
(498 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07268.1 NCU07268.1 hypothetical protein (50866 - 48528) 29 0.80
NCU01099.1 NCU01099.1 hypothetical protein (293350 - 294579) 26 5.2
NCU06976.1 NCU06976.1 DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC) (7286... 26 6.8
NCU09702.1 NCU09702.1 hypothetical protein (17559 - 16093) 26 6.8
NCU09873.1 NCU09873.1 hypothetical protein ( (AY049067) phosphoe... 25 8.8
NCU02572.1 NCU02572.1 hypothetical protein (223823 - 227519) 25 8.8
>NCU07268.1 NCU07268.1 hypothetical protein (50866 - 48528)
Length = 708
Score = 28.9 bits (63), Expect = 0.80
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = +1
Query: 274 LTVCSTSSMDI*STWFASTCCPRIASNASILCEETS*SFDALPEPPSTS 420
L VC+TSS D+ F ST +A+ SI E ++ + D P + S
Sbjct: 513 LLVCATSSTDLIEKTFRSTVLESMAAGESISLEISTLAHDPAPSTTTPS 561
>NCU01099.1 NCU01099.1 hypothetical protein (293350 - 294579)
Length = 409
Score = 26.2 bits (56), Expect = 5.2
Identities = 22/80 (27%), Positives = 36/80 (44%), Gaps = 2/80 (2%)
Frame = -2
Query: 413 DGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSID-EVEQTVNR-DAAVAYTRGQ 240
D G A + +S QR F + G + ++ +D ++ VN A V Y+R
Sbjct: 82 DCGGQEAFMENYLSQQRAHVFSNV-GVLIYVFDIESRDVDRDLATYVNIISALVQYSREA 140
Query: 239 VEFILERMQDANRIMTRDDI 180
F+L D + MTR+D+
Sbjct: 141 KVFVLIHKMDLIQPMTREDV 160
>NCU06976.1 NCU06976.1 DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC) (72864 -
86105)
Length = 4367
Score = 25.8 bits (55), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = -1
Query: 198 NDKGRHCSHHLVRTWID 148
ND CS H++ TWID
Sbjct: 4202 NDADYECSAHVIDTWID 4218
>NCU09702.1 NCU09702.1 hypothetical protein (17559 - 16093)
Length = 488
Score = 25.8 bits (55), Expect = 6.8
Identities = 10/21 (47%), Positives = 11/21 (51%)
Frame = -1
Query: 465 RWQCRCAWKLWQRPNGCGWRL 403
RW AW WQ +G GW L
Sbjct: 339 RWLQPTAWVYWQALDGGGWGL 359
>NCU09873.1 NCU09873.1 hypothetical protein ( (AY049067)
phosphoenolpyruvate carboxykinase [
Length = 561
Score = 25.4 bits (54), Expect = 8.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 234 VHPGEDARCKQDNDKGRHCSHHLVRT-WIDVGLADCGMRCP 115
+HP A+ + + + + L+ T W+ G A G RCP
Sbjct: 432 LHPMRYAKMLAEKIENHNANAWLLNTGWVGAGFAQGGKRCP 472
>NCU02572.1 NCU02572.1 hypothetical protein (223823 - 227519)
Length = 985
Score = 25.4 bits (54), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 92 SDKAENRSGQRMPQSASPTSIHVLTR 169
+DK E R+G++ + T IH+L R
Sbjct: 161 ADKLEKRTGKKRDEQLRYTDIHILER 186
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3036588
Number of Sequences: 6531
Number of extensions: 61845
Number of successful extensions: 254
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of query: 166
length of database: 3,158,374
effective HSP length: 42
effective length of query: 123
effective length of database: 2,884,072
effective search space: 354740856
effective search space used: 354740856
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)