BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_B08_T7.seq
(349 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02052.1 NCU02052.1 hypothetical protein (3192 - 8804) 29 0.36
NCU08730.1 NCU08730.1 hypothetical protein ( (AB002530) mus-23 [... 28 0.62
NCU09433.1 NCU09433.1 predicted protein (6733 - 4401) 28 0.62
NCU01977.1 NCU01977.1 predicted protein (59007 - 60909) 28 0.81
NCU07345.1 NCU07345.1 predicted protein (4761 - 4114) 28 0.81
NCU01479.1 NCU01479.1 hypothetical protein ( (AF323912) matrix A... 27 2.4
NCU07541.1 NCU07541.1 predicted protein (76009 - 77736) 26 3.1
NCU06437.1 NCU06437.1 predicted protein (88634 - 92206) 26 4.0
NCU06450.1 NCU06450.1 predicted protein (130990 - 130127) 25 5.3
NCU06657.1 NCU06657.1 predicted protein (26024 - 25026) 25 5.3
NCU01839.1 NCU01839.1 hypothetical protein (76690 - 73892) 25 6.9
NCU02589.1 NCU02589.1 predicted protein (4511 - 2619) 25 6.9
NCU06698.1 NCU06698.1 hypothetical protein (73044 - 70556) 25 9.0
>NCU02052.1 NCU02052.1 hypothetical protein (3192 - 8804)
Length = 1870
Score = 29.3 bits (64), Expect = 0.36
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = -3
Query: 179 VWHSWSLAKVPNSLPGVLGTPQEKRVLSK-RSTERELVKGKALATGIDNPGPRHLP 15
VW + + + P +LGTP +KR + K +S R L K K + P P LP
Sbjct: 1201 VWKATRDPTIVATAPQILGTPPKKRCVVKFKSEYRTLPKSKDMVAIEAPPPPAPLP 1256
>NCU08730.1 NCU08730.1 hypothetical protein ( (AB002530) mus-23
[Neurospora crassa] ) (10654
Length = 525
Score = 28.5 bits (62), Expect = 0.62
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Frame = +3
Query: 144 VRHFGKAPGVPHSHTKPYVRSKGRK------FEKARGRRNSRGFKV*AVEFSAP 287
V +FG+ P + H KP + KGR R R R F+ V F P
Sbjct: 166 VNYFGRVPEADNIHVKPILLQKGRTKMALYGLSNVRDERMHRTFRDNKVRFYRP 219
>NCU09433.1 NCU09433.1 predicted protein (6733 - 4401)
Length = 748
Score = 28.5 bits (62), Expect = 0.62
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = +2
Query: 155 WQGSRSATQPHQAICPLQGQEIREGKRKEEQQGLQG 262
W+G + P + C GQE EG KE QG+ G
Sbjct: 522 WEGLSVSGGPTREACEKIGQESMEGPAKELLQGILG 557
>NCU01977.1 NCU01977.1 predicted protein (59007 - 60909)
Length = 461
Score = 28.1 bits (61), Expect = 0.81
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 5/65 (7%)
Frame = -1
Query: 199 TYGLVWLCGTPGALPKCLTASL-----AFLGPLRRSVFCPSGARSASWSKVRHSPPALTI 35
T + L G G L L ++L A LGP+ R CP G W++ R+ A
Sbjct: 4 TQEIATLAGLQGVLVYALASALPLFVFALLGPIIRRK-CPEGFVLTEWTRQRYGTIAALY 62
Query: 34 LALAT 20
L+ T
Sbjct: 63 LSFVT 67
>NCU07345.1 NCU07345.1 predicted protein (4761 - 4114)
Length = 193
Score = 28.1 bits (61), Expect = 0.81
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 6/28 (21%)
Frame = +2
Query: 200 PLQGQEIRE------GKRKEEQQGLQGL 265
P+QGQ RE GKRK+E GL+G+
Sbjct: 105 PMQGQTSRELHGLHPGKRKKEHSGLEGV 132
>NCU01479.1 NCU01479.1 hypothetical protein ( (AF323912) matrix AAA
protease MAP-1 [Neurospo
Length = 928
Score = 26.6 bits (57), Expect = 2.4
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 13/54 (24%)
Frame = +2
Query: 206 QGQEIREGKRKEEQQGLQGLSR-------------GVFGTLVTFAVIGQSSLFW 328
Q + ++GK+ EQQG QG R G G L+ + VIG + LFW
Sbjct: 219 QQSDGQQGKQSGEQQGQQGPKRPGAQGQGGQEPPQGFDGGLMNY-VIGTAVLFW 271
>NCU07541.1 NCU07541.1 predicted protein (76009 - 77736)
Length = 575
Score = 26.2 bits (56), Expect = 3.1
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +1
Query: 52 ASALPLTSSRSVLRLDRTRFS*GVPRTPGRLLGTLARLQEC-HTATPSHM--SAPRAGNS 222
A + P S R L D P P +LG AR + SH SAP G
Sbjct: 502 AVSSPSPSPRPSLAHDDAAHGEMTPPIPDWILGAGARTSFLGYNQRKSHAPTSAPADGEE 561
Query: 223 RRQEEGGTAGAS 258
+EE G AG S
Sbjct: 562 EEEEEEGVAGPS 573
>NCU06437.1 NCU06437.1 predicted protein (88634 - 92206)
Length = 1167
Score = 25.8 bits (55), Expect = 4.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 151 TLARLQECHTATPSHMSAPRAGNSRRQEEGGTAGASRFKPWSFRHPCHIC 300
T R + + PS +S P SR G GA ++P +F PC +C
Sbjct: 826 TTTRSRSSSISRPSFLSLPPPF-SRPNLSGPATGA--YRPLTFSPPCELC 872
>NCU06450.1 NCU06450.1 predicted protein (130990 - 130127)
Length = 258
Score = 25.4 bits (54), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 97 PSGARSASWSKVRHSPPALTILALATCPGG 8
P+GAR+A +SK RH+ +L + GG
Sbjct: 118 PTGARTALFSKARHAARVGDVLMVTHRRGG 147
>NCU06657.1 NCU06657.1 predicted protein (26024 - 25026)
Length = 199
Score = 25.4 bits (54), Expect = 5.3
Identities = 11/41 (26%), Positives = 19/41 (45%)
Frame = -1
Query: 169 PGALPKCLTASLAFLGPLRRSVFCPSGARSASWSKVRHSPP 47
P + P+CL A+ + S CP G+ ++ + PP
Sbjct: 150 PSSRPRCLAATQCYASRWPASQSCPPGSVPLGSQQLTNVPP 190
>NCU01839.1 NCU01839.1 hypothetical protein (76690 - 73892)
Length = 893
Score = 25.0 bits (53), Expect = 6.9
Identities = 15/51 (29%), Positives = 21/51 (40%), Gaps = 6/51 (11%)
Frame = -3
Query: 149 PNSLPG------VLGTPQEKRVLSKRSTERELVKGKALATGIDNPGPRHLP 15
P S+PG TP ++ S + E G + T + P P HLP
Sbjct: 45 PTSIPGWGSPGTTHSTPLVASSTARASGDTEESSGSSTPTSLSPPPPPHLP 95
>NCU02589.1 NCU02589.1 predicted protein (4511 - 2619)
Length = 630
Score = 25.0 bits (53), Expect = 6.9
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = +1
Query: 46 PVASALPLTSSRSVLRLDRTRFS*GVPRTPGRLLGTLARLQE 171
P + A +S +SV D T+F +P T G+L + +++E
Sbjct: 229 PTSIAPSTSSGKSVTFADDTKFVDQLPTTAGKLTQLMQKVKE 270
>NCU06698.1 NCU06698.1 hypothetical protein (73044 - 70556)
Length = 686
Score = 24.6 bits (52), Expect = 9.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 88 ARSASWSKVRHSPPA 44
+ ASW RHSPPA
Sbjct: 307 SHGASWDASRHSPPA 321
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2598713
Number of Sequences: 6531
Number of extensions: 60346
Number of successful extensions: 218
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of query: 116
length of database: 3,158,374
effective HSP length: 42
effective length of query: 73
effective length of database: 2,884,072
effective search space: 210537256
effective search space used: 210537256
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)