BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_B09_T7.seq
(336 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07448.1 NCU07448.1 hypothetical protein (88055 - 86037) 27 2.2
NCU00954.1 NCU00954.1 hypothetical protein (45481 - 43940) 26 2.9
NCU09068.1 NCU09068.1 hypothetical protein (22128 - 25415) 25 6.5
NCU07458.1 NCU07458.1 hypothetical protein (5133 - 7966) 25 8.5
NCU02762.1 NCU02762.1 hypothetical protein (13422 - 6705) 25 8.5
>NCU07448.1 NCU07448.1 hypothetical protein (88055 - 86037)
Length = 561
Score = 26.6 bits (57), Expect = 2.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 131 YEADYERTNFLWLFFIYEMPHIFH 202
+E+ +E + LWL + E HI+H
Sbjct: 470 FESQHETLDTLWLLLLAEYNHIYH 493
>NCU00954.1 NCU00954.1 hypothetical protein (45481 - 43940)
Length = 454
Score = 26.2 bits (56), Expect = 2.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -3
Query: 205 IMKDVGHFINEEKPEEISALIIGFIKK 125
+ + GHFI+E+ PE+ + ++ F ++
Sbjct: 406 VFPEAGHFIHEDLPEKTAIALVDFHRR 432
>NCU09068.1 NCU09068.1 hypothetical protein (22128 - 25415)
Length = 1036
Score = 25.0 bits (53), Expect = 6.5
Identities = 13/42 (30%), Positives = 19/42 (44%)
Frame = +3
Query: 123 NFFMKPIMSALISSGFSSFMKCPTSFIITTSSSNGTNFLRPP 248
NF P S ++S + M P + + + NG NF PP
Sbjct: 413 NFSFSPSTSPMVSHDPFTAMFGPNNSSMHSGPINGNNFYSPP 454
>NCU07458.1 NCU07458.1 hypothetical protein (5133 - 7966)
Length = 846
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/34 (35%), Positives = 17/34 (49%)
Frame = +3
Query: 147 SALISSGFSSFMKCPTSFIITTSSSNGTNFLRPP 248
S+ SS ++ PT I+ S G N L+PP
Sbjct: 730 SSSSSSSSTTVAHSPTDSILIASFDEGANCLKPP 763
>NCU02762.1 NCU02762.1 hypothetical protein (13422 - 6705)
Length = 2218
Score = 24.6 bits (52), Expect = 8.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 65 ITMNILTLFIMYSIYFSLVEFLYEADYERTNFL 163
I NI++++I +++ SL+ + Y+RT+ L
Sbjct: 1758 IAWNIISMYIFVNLFVSLIYESFSYVYQRTSGL 1790
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1900393
Number of Sequences: 6531
Number of extensions: 33247
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of query: 112
length of database: 3,158,374
effective HSP length: 42
effective length of query: 69
effective length of database: 2,884,072
effective search space: 199000968
effective search space used: 199000968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)