BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_B12_T7.seq
         (175 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU02286.1 NCU02286.1 predicted protein (143157 - 146135)              23  6.7
NCU09232.1 NCU09232.1 predicted protein (11071 - 12952)                23  8.7
NCU07411.1 NCU07411.1 hypothetical protein (23192 - 19121)             23  8.7

>NCU02286.1 NCU02286.1 predicted protein (143157 - 146135)
          Length = 933

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 9/21 (42%), Positives = 11/21 (51%)
 Frame = -2

Query: 105 YEKTNGGEGFNKEETPPRTYP 43
           Y   N G G+  E  PP +YP
Sbjct: 781 YPVNNYGHGYRPEVPPPVSYP 801



>NCU09232.1 NCU09232.1 predicted protein (11071 - 12952)
          Length = 564

 Score = 23.1 bits (48), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 96 TNGGEGFNKEETPPR 52
          T+ GEG ++ E PPR
Sbjct: 6  TDNGEGSSRRENPPR 20



>NCU07411.1 NCU07411.1 hypothetical protein (23192 - 19121)
          Length = 1131

 Score = 23.1 bits (48), Expect = 8.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 24  RANSSRWDTSLEGFLPC*ILLLHWFFHTVHASL*G*SYMIGTVHV 158
           R++S+  D  LE  +PC +   H    T    L   +Y  GT+ V
Sbjct: 516 RSSSTGLDPKLEQTIPCGVAFHHAGLTTEERELIANAYDAGTLKV 560



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1142052
Number of Sequences: 6531
Number of extensions: 19286
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 58
length of database: 3,158,374
effective HSP length: 33
effective length of query: 24
effective length of database: 2,942,851
effective search space: 70628424
effective search space used: 70628424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)