BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_C02_T7.seq
(404 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU06714.1 NCU06714.1 hypothetical protein (26752 - 23897) 25 6.6
>NCU06714.1 NCU06714.1 hypothetical protein (26752 - 23897)
Length = 951
Score = 25.4 bits (54), Expect = 6.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 40 EDRNQPGSHRS*LKSCKNLKVEQTYNLIF 126
E N G+H S K+C N K ++ + ++F
Sbjct: 26 ESNNTNGNHVSPAKTCSNEKKQKKHKILF 54
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1575861
Number of Sequences: 6531
Number of extensions: 19283
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 134
length of database: 3,158,374
effective HSP length: 42
effective length of query: 92
effective length of database: 2,884,072
effective search space: 265334624
effective search space used: 265334624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)