BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_C04_T7.seq
(297 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00970.1 NCU00970.1 predicted protein (94052 - 95355) 26 3.3
NCU07121.1 NCU07121.1 hypothetical protein (30982 - 33239) 25 4.3
NCU06512.1 NCU06512.1 hypothetical protein (154723 - 152258) 25 4.3
NCU06398.1 NCU06398.1 predicted protein (77924 - 80479) 25 4.3
NCU00629.1 NCU00629.1 hypothetical protein (179752 - 182264) 25 7.3
NCU07959.1 NCU07959.1 hypothetical protein (43778 - 45290) 25 7.3
>NCU00970.1 NCU00970.1 predicted protein (94052 - 95355)
Length = 334
Score = 25.8 bits (55), Expect = 3.3
Identities = 14/47 (29%), Positives = 21/47 (43%), Gaps = 1/47 (2%)
Frame = +2
Query: 50 CRHPFLESKRAYVVPQHVEELPHCYWP-GSSDKPRAELPSLVKIRSR 187
C P S AYV + E P+C W G+S P + +++R
Sbjct: 255 CTSPSSSSSSAYVARKRTERGPNCEWRIGASGLAHFVKPKHICVQAR 301
>NCU07121.1 NCU07121.1 hypothetical protein (30982 - 33239)
Length = 732
Score = 25.4 bits (54), Expect = 4.3
Identities = 14/54 (25%), Positives = 27/54 (49%)
Frame = +2
Query: 59 PFLESKRAYVVPQHVEELPHCYWPGSSDKPRAELPSLVKIRSRCMQQLEKLRPD 220
P+ +R + +P+ ++E + P + P+L K+ S+ + QLE R D
Sbjct: 365 PYHWDRRFFDLPRLIKEFSTMFDEEQYMTPSPDTPNLKKLISQVLNQLEADRRD 418
>NCU06512.1 NCU06512.1 hypothetical protein (154723 - 152258)
Length = 769
Score = 25.4 bits (54), Expect = 4.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 104 EELPHCYWPGSSDKPRAELPSLVKIRSRCMQQLEKLRPDHI 226
EE P PG D +P+L + + R + L L+P+ +
Sbjct: 691 EEYPRHIGPGVYDIHSPRVPTLEEFKQRIEEMLAYLKPEQL 731
>NCU06398.1 NCU06398.1 predicted protein (77924 - 80479)
Length = 825
Score = 25.4 bits (54), Expect = 4.3
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = +1
Query: 10 RPRSITKGRRANSLPPPVP 66
+P+SIT RR S PPP P
Sbjct: 221 QPQSITPPRRTPSPPPPPP 239
>NCU00629.1 NCU00629.1 hypothetical protein (179752 - 182264)
Length = 793
Score = 24.6 bits (52), Expect = 7.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 128 PGSSDKPRAELPSLVKIRSRCMQQLEKLRPDHIRRLNPTPYKVSV 262
P D+ RA V++ +C+QQLEK + R+ P SV
Sbjct: 681 PSGMDRCRA-----VRLAIKCIQQLEKYGRNVHNRVKMDPMSASV 720
>NCU07959.1 NCU07959.1 hypothetical protein (43778 - 45290)
Length = 484
Score = 24.6 bits (52), Expect = 7.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 157 AALAGEDQKPLYATARKTAAGSHQAAKSNTLQGECECKA 273
A L+G P+ + A T+ GS+QA S LQG C A
Sbjct: 124 APLSGYQYIPVNS-ATVTSRGSNQAESSAWLQGNSGCPA 161
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2227846
Number of Sequences: 6531
Number of extensions: 51459
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of query: 99
length of database: 3,158,374
effective HSP length: 39
effective length of query: 59
effective length of database: 2,903,665
effective search space: 171316235
effective search space used: 171316235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)