BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_C07_T7.seq
         (193 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU00302.1 NCU00302.1 hypothetical protein (298478 - 302609)           26  1.0
NCU01005.1 NCU01005.1 predicted protein (36307 - 35381)                23  6.6
NCU02337.1 NCU02337.1 predicted protein (61474 - 59978)                23  8.6

>NCU00302.1 NCU00302.1 hypothetical protein (298478 - 302609)
          Length = 969

 Score = 26.2 bits (56), Expect = 1.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 53  PRHYMIITHPDKQSKLRLQHRATQSH 130
           P H   I HP  Q++L+LQH+  Q H
Sbjct: 493 PNHVNQI-HPQLQAQLQLQHQQAQEH 517



>NCU01005.1 NCU01005.1 predicted protein (36307 - 35381)
          Length = 308

 Score = 23.5 bits (49), Expect = 6.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 32  TTHSIFSPRHYMIITHPDKQSKLRLQHRATQSHKVC----AT*HVRE 160
           ++HS    +H  I   P  ++  +L HR TQ ++      AT HV E
Sbjct: 46  SSHSQSQQQHQSIPQKPLSEALQKLNHRLTQHNRRAYPPQATRHVAE 92



>NCU02337.1 NCU02337.1 predicted protein (61474 - 59978)
          Length = 498

 Score = 23.1 bits (48), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 127 TLRCAVL*SEFTLFIGMGYYHVVSW 53
           +L  A+  S F      GYY+ VSW
Sbjct: 288 SLGSAIFFSTFEYLKAQGYYNFVSW 312



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1210700
Number of Sequences: 6531
Number of extensions: 19246
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of query: 64
length of database: 3,158,374
effective HSP length: 39
effective length of query: 24
effective length of database: 2,903,665
effective search space: 69687960
effective search space used: 69687960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)