BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_C09_T7.seq
(474 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09223.1 NCU09223.1 hypothetical protein (128580 - 126999) 53 5e-08
NCU00813.1 NCU00813.1 hypothetical protein (21000 - 19409) 33 0.052
NCU02550.1 NCU02550.1 hypothetical protein (153083 - 155796) 28 1.7
NCU02058.1 NCU02058.1 predicted protein (32084 - 30345) 28 1.7
NCU01722.1 NCU01722.1 hypothetical protein ( (AL356833) related ... 27 2.8
NCU07628.1 NCU07628.1 predicted protein (22376 - 23236) 27 3.7
NCU00562.1 NCU00562.1 predicted protein (73236 - 74972) 26 4.8
NCU08551.1 NCU08551.1 hypothetical protein (82092 - 79211) 26 6.3
NCU06376.1 NCU06376.1 predicted protein (137542 - 135719) 26 6.3
NCU07517.1 NCU07517.1 hypothetical protein (16390 - 14741) 25 8.3
NCU00747.1 NCU00747.1 predicted protein (70501 - 71208) 25 8.3
NCU00368.1 NCU00368.1 predicted protein (12298 - 10181) 25 8.3
NCU08611.1 NCU08611.1 hypothetical protein (17167 - 19047) 25 8.3
NCU08056.1 NCU08056.1 hypothetical protein (31526 - 36428) 25 8.3
NCU07625.1 NCU07625.1 predicted protein (15161 - 17566) 25 8.3
>NCU09223.1 NCU09223.1 hypothetical protein (128580 - 126999)
Length = 505
Score = 52.8 bits (125), Expect = 5e-08
Identities = 27/58 (46%), Positives = 38/58 (64%), Gaps = 2/58 (3%)
Frame = +1
Query: 22 EEDVVIAKMDATANDVPSEFDVQGYPT--LYFVTPSGKKVSYEGGRTADEIVDYIKKN 189
++ VVIAK+DAT NDVP E +QG+PT LY K V Y G RT ++++ +I +N
Sbjct: 408 KDKVVIAKVDATQNDVPDE--IQGFPTIKLYAAGAKDKPVEYSGPRTVEDLIKFISEN 463
>NCU00813.1 NCU00813.1 hypothetical protein (21000 - 19409)
Length = 504
Score = 32.7 bits (73), Expect = 0.052
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = +1
Query: 85 VQGYPTLYFVTPS--GKKV--SYEGGRTADEIVDYI 180
VQG+PTL + PS GK + Y+G RTA IVD +
Sbjct: 101 VQGFPTLKIIRPSKNGKPIVEDYQGQRTASAIVDAV 136
>NCU02550.1 NCU02550.1 hypothetical protein (153083 - 155796)
Length = 643
Score = 27.7 bits (60), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
Frame = +1
Query: 64 DVPSEFDVQGYPTLYFVTPSGKKVSYEG---GRTADEIVDY 177
DVP ++D+ + VTP G+ V + GR+ D+ V+Y
Sbjct: 506 DVPGQYDLDLIKQMTGVTPRGRTVIFRPSVLGRSLDQYVNY 546
>NCU02058.1 NCU02058.1 predicted protein (32084 - 30345)
Length = 579
Score = 27.7 bits (60), Expect = 1.7
Identities = 13/39 (33%), Positives = 18/39 (45%)
Frame = -3
Query: 466 PPGQVHHGRICYSISRNGIQYQAKPGTTXSNNQLSS*PP 350
PPG HG + + IQ+ P S NQ+ + PP
Sbjct: 341 PPGYHLHGGYGLQVESHEIQFHTPPVAAQSGNQVIATPP 379
>NCU01722.1 NCU01722.1 hypothetical protein ( (AL356833) related to
suppressor protein SPT23
Length = 1360
Score = 26.9 bits (58), Expect = 2.8
Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 2/45 (4%)
Frame = -1
Query: 417 TGYSIRQNRGQHXPTTN--SRLNPLAKSGVGSCLAKTXFPPPLPV 289
+G R H TN + L+PL +S VGS A P P PV
Sbjct: 665 SGNPSRDPSPSHWQNTNGGNLLSPLMRSAVGSPFATAPAPAPAPV 709
>NCU07628.1 NCU07628.1 predicted protein (22376 - 23236)
Length = 286
Score = 26.6 bits (57), Expect = 3.7
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = -2
Query: 383 TIQQPTLVLTPSQNLALEAALPKHXFPLPYLS 288
T+ PT +L P+ A EAA P P+LS
Sbjct: 46 TVPSPTTILPPASKTAPEAAPGGATSPRPFLS 77
>NCU00562.1 NCU00562.1 predicted protein (73236 - 74972)
Length = 578
Score = 26.2 bits (56), Expect = 4.8
Identities = 16/51 (31%), Positives = 23/51 (44%)
Frame = -2
Query: 449 PRTDLLQYFSQRDTVSGKTGDNTIQQPTLVLTPSQNLALEAALPKHXFPLP 297
P ++LLQ + T + GD + P LV AL + P+ PLP
Sbjct: 326 PSSNLLQSITALATFRARNGDVSSALPMLVSILQARKALPTSDPRRIPPLP 376
>NCU08551.1 NCU08551.1 hypothetical protein (82092 - 79211)
Length = 783
Score = 25.8 bits (55), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -2
Query: 380 IQQPTLVLTPSQNLALEAALPKHXFPL 300
+Q T TPS+ A AALP+H P+
Sbjct: 552 VQTTTKSCTPSKPKAQAAALPQHHMPV 578
>NCU06376.1 NCU06376.1 predicted protein (137542 - 135719)
Length = 564
Score = 25.8 bits (55), Expect = 6.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 2 RGRGRGAKRTL*SRRWTRPRMTCPVSSMSRVTPPSTSSLPAERRS 136
R G + R+ S T R P SS PP+TSS+P+ R S
Sbjct: 319 RDSGYASDRSSSSASETETRQLIPPSSPP--PPPTTSSMPSSRSS 361
>NCU07517.1 NCU07517.1 hypothetical protein (16390 - 14741)
Length = 549
Score = 25.4 bits (54), Expect = 8.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 458 AGTPRTDLLQYFSQRDTVSGKTGDNTI 378
AGTP+ + + D +SG TGDN++
Sbjct: 82 AGTPKGEYEKKGRSTDYLSGPTGDNSL 108
>NCU00747.1 NCU00747.1 predicted protein (70501 - 71208)
Length = 235
Score = 25.4 bits (54), Expect = 8.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 470 AAARAGTPRTDLLQYFSQRDTVSGKTGDNTIQQPTLVLTPSQNLALEAALPKHXFPL 300
+A TPR Y S + S T TI P+L+ +PS + A A + PL
Sbjct: 24 SAKGPSTPRA-FNNYSSSWISSSPATATTTISSPSLIPSPSSSAAAATAQKQQLQPL 79
>NCU00368.1 NCU00368.1 predicted protein (12298 - 10181)
Length = 705
Score = 25.4 bits (54), Expect = 8.3
Identities = 12/39 (30%), Positives = 19/39 (47%)
Frame = -2
Query: 380 IQQPTLVLTPSQNLALEAALPKHXFPLPYLSAASNTDAQ 264
+ + TLV+ ++ PK +PLP A SN + Q
Sbjct: 437 VMKQTLVIPAQRSCFAGVETPKEQWPLPPTPAPSNNEPQ 475
>NCU08611.1 NCU08611.1 hypothetical protein (17167 - 19047)
Length = 579
Score = 25.4 bits (54), Expect = 8.3
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -1
Query: 117 SDEVEGGVTLDIELTGHVIRGRVHLRDHNVLFAPRPRP 4
+DE +G +DI L G RG + HN +P P P
Sbjct: 248 ADEAKGTQGIDIYLCGGGFRGYGSMLMHNDPISPYPIP 285
>NCU08056.1 NCU08056.1 hypothetical protein (31526 - 36428)
Length = 1612
Score = 25.4 bits (54), Expect = 8.3
Identities = 13/32 (40%), Positives = 16/32 (49%)
Frame = -2
Query: 458 AGTPRTDLLQYFSQRDTVSGKTGDNTIQQPTL 363
+G +T LL SQR TV TGD + L
Sbjct: 963 SGAGKTTLLNTLSQRQTVGVVTGDMLVDSKPL 994
>NCU07625.1 NCU07625.1 predicted protein (15161 - 17566)
Length = 677
Score = 25.4 bits (54), Expect = 8.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 5 GRGRGAKRTL*SRRWTRPRMTCPVSSMSRVTPPSTSSLPAERRSPTRAAG 154
GR +GAK + R P ++ + PP ++ P RR P R G
Sbjct: 498 GRPKGAKNK--NPRPRDPAAPAAAAAAAATPPPPDANAPPARRGPGRPKG 545
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2797573
Number of Sequences: 6531
Number of extensions: 55874
Number of successful extensions: 217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of query: 158
length of database: 3,158,374
effective HSP length: 42
effective length of query: 115
effective length of database: 2,884,072
effective search space: 331668280
effective search space used: 331668280
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)