BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_C10_T7.seq
(266 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00917.1 NCU00917.1 predicted protein (13154 - 15837) 29 0.25
NCU00742.1 NCU00742.1 hypothetical protein (48642 - 46661) 26 2.1
NCU08481.1 NCU08481.1 predicted protein (12741 - 13271) 26 2.7
NCU07711.1 NCU07711.1 hypothetical protein (96157 - 93848) 25 4.6
NCU08727.1 NCU08727.1 hypothetical protein ( (AL513409) putative... 24 7.9
NCU07706.1 NCU07706.1 predicted protein (67177 - 70579) 24 7.9
>NCU00917.1 NCU00917.1 predicted protein (13154 - 15837)
Length = 833
Score = 29.3 bits (64), Expect = 0.25
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 2 RGRGRGTAPSTAGGAPSIFTSRHGATVKPHTAL 100
RGRGR +T G +P+ T+ ATV PHTA+
Sbjct: 505 RGRGRPPKNNTVGPSPATATATATATV-PHTAV 536
>NCU00742.1 NCU00742.1 hypothetical protein (48642 - 46661)
Length = 513
Score = 26.2 bits (56), Expect = 2.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 220 NVHHRQIKYLPGRPL 264
N +H +KYLPG PL
Sbjct: 191 NTYHENVKYLPGIPL 205
>NCU08481.1 NCU08481.1 predicted protein (12741 - 13271)
Length = 159
Score = 25.8 bits (55), Expect = 2.7
Identities = 15/35 (42%), Positives = 19/35 (53%)
Frame = -1
Query: 206 PSRFSNASARAYVGALSVLISRGICPRFALLRSFP 102
P FS SAR ++GALSV ++ IC R P
Sbjct: 47 PIEFSGLSARWFLGALSVAVA--ICTSLRWKRYVP 79
>NCU07711.1 NCU07711.1 hypothetical protein (96157 - 93848)
Length = 603
Score = 25.0 bits (53), Expect = 4.6
Identities = 11/41 (26%), Positives = 17/41 (40%)
Frame = -3
Query: 147 QPGNLPALRLTQKLSHKAVCGFTVAPCREVKIDGAPPAVDG 25
+ G P L ++ +C +A C E +DG DG
Sbjct: 432 EEGEEPQLHFIVAVATLVICTVIIAFCAEYMVDGISAITDG 472
>NCU08727.1 NCU08727.1 hypothetical protein ( (AL513409) putative
protein [Neurospora crassa
Length = 120
Score = 24.3 bits (51), Expect = 7.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +2
Query: 20 TAPSTAGGAPSIFTSRHGATVK 85
T S G+P++FTS HG ++
Sbjct: 28 TLRSYLSGSPTVFTSEHGLALQ 49
>NCU07706.1 NCU07706.1 predicted protein (67177 - 70579)
Length = 909
Score = 24.3 bits (51), Expect = 7.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 7 SRPRYRAVDSRGRTVDFYLSARRNSKAAYR 96
SRP RA DSR R+ Y + R S + R
Sbjct: 149 SRPASRAYDSRSRSRSRYDAPRNRSPSTNR 178
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1799554
Number of Sequences: 6531
Number of extensions: 35918
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of query: 88
length of database: 3,158,374
effective HSP length: 39
effective length of query: 49
effective length of database: 2,903,665
effective search space: 142279585
effective search space used: 142279585
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)