BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_C11_T7.seq
         (240 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU01729.1 NCU01729.1 hypothetical protein ( hypothetical protei...    27  1.3
NCU00170.1 NCU00170.1 hypothetical protein (97195 - 94709)             25  2.9
NCU01294.1 NCU01294.1 hypothetical protein (5846 - 8547)               24  8.4

>NCU01729.1 NCU01729.1 hypothetical protein ( hypothetical protein
           B24H17.210 [imported] - N
          Length = 795

 Score = 26.6 bits (57), Expect = 1.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 77  SFSRPSWQSGTQPPSSPALHLG 12
           +FSRP+  + ++PP SPA+  G
Sbjct: 76  NFSRPNAMASSRPPQSPAIGSG 97



>NCU00170.1 NCU00170.1 hypothetical protein (97195 - 94709)
          Length = 784

 Score = 25.4 bits (54), Expect = 2.9
 Identities = 15/47 (31%), Positives = 20/47 (41%)
 Frame = -2

Query: 143 FDSARPDATNCSNE*ADRLCRASFSRPSWQSGTQPPSSPALHLGRDH 3
           F S +   ++ S +  D   RA     +  SGT  P SP  H  R H
Sbjct: 3   FFSKKSSRSSTSTDRVDADTRAGRYESTQPSGTSGPRSPYSHAKRSH 49



>NCU01294.1 NCU01294.1 hypothetical protein (5846 - 8547)
          Length = 832

 Score = 23.9 bits (50), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 166 TTDNRP-KISTQPDQMLQTALTNRQIG 89
           T+ N P +  TQP+  +Q A +NR IG
Sbjct: 317 TSLNSPVRTHTQPEAAVQAAASNRHIG 343



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1336195
Number of Sequences: 6531
Number of extensions: 20302
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of query: 80
length of database: 3,158,374
effective HSP length: 39
effective length of query: 40
effective length of database: 2,903,665
effective search space: 116146600
effective search space used: 116146600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)