BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_C12_T7.seq
         (692 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU08728.1 NCU08728.1 hypothetical protein (100552 - 101195)           49  9e-07
NCU00971.1 NCU00971.1 hypothetical protein (96817 - 95788)             37  0.003
NCU02088.1 NCU02088.1 predicted protein (17315 - 18765)                26  7.8
NCU00547.1 NCU00547.1 predicted protein (11291 - 9215)                 26  7.8

>NCU08728.1 NCU08728.1 hypothetical protein (100552 - 101195)
          Length = 80

 Score = 49.3 bits (116), Expect = 9e-07
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +3

Query: 174 IVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEF 305
           I T +R+++ILP  VG    +HNGK++I + +T  MVG KLGEF
Sbjct: 35  IRTQARSATILPNFVGLKFQVHNGKDYIDLTVTEEMVGHKLGEF 78



>NCU00971.1 NCU00971.1 hypothetical protein (96817 - 95788)
          Length = 152

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 21/64 (32%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 126 LLAKIEKVNMK----EEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRK 293
           L+ K+ K   +    E+ + + T  R   ++P M+G  I I++GKE   + I   MVG  
Sbjct: 63  LIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPEMVGHY 122

Query: 294 LGEF 305
           L EF
Sbjct: 123 LAEF 126



>NCU02088.1 NCU02088.1 predicted protein (17315 - 18765)
          Length = 464

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 563 QSTKTYPYVCFQSTKSS*RDSLALLRGNCYDTEPHALSSI 682
           + + TYP+V    TKS   DSL L+  N  +   + L  I
Sbjct: 187 EGSSTYPFVVEDETKSLSLDSLDLMSSNWMENIANFLEKI 226



>NCU00547.1 NCU00547.1 predicted protein (11291 - 9215)
          Length = 589

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 13/29 (44%), Positives = 15/29 (50%)
 Frame = -1

Query: 641 LVVTPANLVKNSLCFENRHRDTFLCFENS 555
           L V P N V+ S+   N H D    FENS
Sbjct: 119 LSVPPTNAVEESIICRNLHPDVVSRFENS 147



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3449406
Number of Sequences: 6531
Number of extensions: 62252
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of query: 230
length of database: 3,158,374
effective HSP length: 44
effective length of query: 186
effective length of database: 2,871,010
effective search space: 534007860
effective search space used: 534007860
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)