BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_D01_T7.seq
(384 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07551.1 NCU07551.1 predicted protein (110345 - 109237) 29 0.55
NCU01554.1 NCU01554.1 hypothetical protein ( (AL451012) related ... 28 0.72
NCU01947.1 NCU01947.1 hypothetical protein (35267 - 32195) 28 0.94
NCU07297.1 NCU07297.1 hypothetical protein (63527 - 61710) 28 1.2
NCU02768.1 NCU02768.1 hypothetical protein (27576 - 21386) 27 2.1
NCU06851.1 NCU06851.1 predicted protein (41561 - 38745) 25 6.1
NCU06767.1 NCU06767.1 hypothetical protein (106716 - 103206) 25 6.1
NCU06775.1 NCU06775.1 predicted protein (22500 - 15216) 25 8.0
NCU07753.1 NCU07753.1 predicted protein (47891 - 45370) 25 8.0
NCU07868.1 NCU07868.1 hypothetical protein (103196 - 108024) 25 8.0
>NCU07551.1 NCU07551.1 predicted protein (110345 - 109237)
Length = 347
Score = 28.9 bits (63), Expect = 0.55
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Frame = +2
Query: 2 RAAARAGTDMPSLSTPTQSPARPQEPHHMGLKRMARIMDT--MDKKTDHQIKVQNSSTEA 175
+AAA P PT++ A+ P LKR A I++T ++ ++ Q ++ SSTE+
Sbjct: 17 KAAAATPAKAPR---PTKAAAKKNTPRKTALKRAAEIVETEQVEVESTVQTPLKESSTES 73
Query: 176 A 178
+
Sbjct: 74 S 74
>NCU01554.1 NCU01554.1 hypothetical protein ( (AL451012) related to
c-module-binding factor
Length = 1458
Score = 28.5 bits (62), Expect = 0.72
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 AAARAGTDMPSLS-TPTQSPARPQEPHHMGLKRMARIMDTMDKKTDH 142
AA A PS S +P +SP+ P P + R+MDT D+++D+
Sbjct: 1326 AAPSATRISPSPSPSPVRSPSPPPPPPKPAGPTVVRLMDTEDEESDY 1372
>NCU01947.1 NCU01947.1 hypothetical protein (35267 - 32195)
Length = 943
Score = 28.1 bits (61), Expect = 0.94
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 17 AGTDMPSLSTPTQSPARPQEPH 82
A + M +LS SPARPQ PH
Sbjct: 560 AASAMATLSVQAHSPARPQPPH 581
>NCU07297.1 NCU07297.1 hypothetical protein (63527 - 61710)
Length = 605
Score = 27.7 bits (60), Expect = 1.2
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 2 RAAARAGTDMPSLSTPTQSPARPQEPHHMGLKRMARIMDTMDKKTDHQIKVQNSSTEAAS 181
RAA+ +G++ +LS P P P P H L T T IK NS A+
Sbjct: 148 RAASGSGSNSTTLSLPLPPPPPPPPPKHKSL--------TFKSGTTSAIKNINSGLTASG 199
Query: 182 R 184
+
Sbjct: 200 K 200
>NCU02768.1 NCU02768.1 hypothetical protein (27576 - 21386)
Length = 1671
Score = 26.9 bits (58), Expect = 2.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 100 NGTNHGHYG*EDGSSDQGSELLDGGGFAGHLVG 198
+G HGH G + G + ++ GGG +G G
Sbjct: 1174 HGHGHGHGGGQVGGGGRNGSVVGGGGSSGSSAG 1206
>NCU06851.1 NCU06851.1 predicted protein (41561 - 38745)
Length = 938
Score = 25.4 bits (54), Expect = 6.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 20 GTDMPSLSTPTQSPARPQEPHHMGL 94
G D P S + P P PHH GL
Sbjct: 906 GRDPPMRSVDLRLPLPPPPPHHHGL 930
>NCU06767.1 NCU06767.1 hypothetical protein (106716 - 103206)
Length = 1073
Score = 25.4 bits (54), Expect = 6.1
Identities = 17/64 (26%), Positives = 27/64 (41%), Gaps = 1/64 (1%)
Frame = +2
Query: 5 AAARAGTDMPSLSTPTQSPARPQ-EPHHMGLKRMARIMDTMDKKTDHQIKVQNSSTEAAS 181
A ++ T S STP ++PA+P+ E + L+ R T K K T
Sbjct: 67 ATSKTKTAAASQSTPKKTPAKPEPEEPKVALRTSPRKKATPAAKAPEPPKTTTKKTSTTK 126
Query: 182 RGTS 193
+ T+
Sbjct: 127 KPTT 130
>NCU06775.1 NCU06775.1 predicted protein (22500 - 15216)
Length = 1701
Score = 25.0 bits (53), Expect = 8.0
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = +1
Query: 103 GTNHGHYG*EDGSSDQGSELLDGGGFAGH 189
G++H +G +SDQ S GGG G+
Sbjct: 1042 GSSHASHGSAKSNSDQSSGSSGGGGDGGY 1070
>NCU07753.1 NCU07753.1 predicted protein (47891 - 45370)
Length = 814
Score = 25.0 bits (53), Expect = 8.0
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +2
Query: 56 SPARPQEPHHMGLKRMARIMDTMDKKTDHQIKVQNSSTEAASRGTS*ASFCLSFFTPAMK 235
S RPQ P+ R A + HQ K S + AS + AS + P
Sbjct: 463 SQTRPQSPNSAAPSRSATASPEKQQHQHHQQKPSTSPSLPASTSPALASSVPTHMIPKRS 522
Query: 236 HTLS 247
+LS
Sbjct: 523 DSLS 526
>NCU07868.1 NCU07868.1 hypothetical protein (103196 - 108024)
Length = 1551
Score = 25.0 bits (53), Expect = 8.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 41 STPTQSPARPQEPHHMGLKRMARIMDTMDKKTDHQIKVQNSSTEA 175
STPT PA+P P H G + + + VQ + TEA
Sbjct: 591 STPTPPPAKPTAPSH-GRTESTTGKTAEQLRDEFKNAVQKAKTEA 634
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1938601
Number of Sequences: 6531
Number of extensions: 34406
Number of successful extensions: 143
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of query: 128
length of database: 3,158,374
effective HSP length: 42
effective length of query: 85
effective length of database: 2,884,072
effective search space: 245146120
effective search space used: 245146120
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)