BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_D02_T7.seq
         (300 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU00314.1 NCU00314.1 predicted protein (344064 - 345170)              24  9.7
NCU09209.1 NCU09209.1 hypothetical protein (74862 - 72643)             24  9.7
NCU01022.1 NCU01022.1 hypothetical protein ( hypothetical protei...    24  9.7

>NCU00314.1 NCU00314.1 predicted protein (344064 - 345170)
          Length = 368

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 142 RHHSSLVFSSPTPLVWTP 89
           +HH  L  +SP    WTP
Sbjct: 26  QHHQDLTSTSPKQTAWTP 43



>NCU09209.1 NCU09209.1 hypothetical protein (74862 - 72643)
          Length = 716

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 61 HKGVRLSRSPWMGTC 17
          HKG R+SR  W  TC
Sbjct: 55 HKGHRISREDWTLTC 69



>NCU01022.1 NCU01022.1 hypothetical protein ( hypothetical protein
           1A9.230 [imported] - Neur
          Length = 751

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 181 LKLMRKHIRYILLRHHSSLVFSSPTPL 101
           +K  RK I+Y    ++S ++F+SP  L
Sbjct: 417 MKFTRKTIKYFSQFYNSDIIFASPLGL 443



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1919457
Number of Sequences: 6531
Number of extensions: 37585
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of query: 100
length of database: 3,158,374
effective HSP length: 39
effective length of query: 60
effective length of database: 2,903,665
effective search space: 174219900
effective search space used: 174219900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)