BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_D03_T7.seq
(177 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07151.1 NCU07151.1 hypothetical protein (20972 - 20293) 29 0.16
NCU06862.1 NCU06862.1 predicted protein (16576 - 14426) 27 0.60
NCU02052.1 NCU02052.1 hypothetical protein (3192 - 8804) 25 3.0
NCU00420.1 NCU00420.1 predicted protein (1957 - 3663) 25 3.0
NCU02527.1 NCU02527.1 predicted protein (91084 - 88184) 24 3.9
NCU00625.1 NCU00625.1 hypothetical protein (153946 - 167238) 24 5.1
NCU06799.1 NCU06799.1 hypothetical protein ( hypothetical protei... 23 8.7
NCU07840.1 NCU07840.1 hypothetical protein (7219 - 4580) 23 8.7
NCU01394.1 NCU01394.1 predicted protein (10941 - 6982) 23 8.7
NCU00348.1 NCU00348.1 hypothetical protein (470655 - 470052) 23 8.7
>NCU07151.1 NCU07151.1 hypothetical protein (20972 - 20293)
Length = 188
Score = 28.9 bits (63), Expect = 0.16
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 167 GPGFAGICCLSSVLGSIFFISLNCLPHMSRGGVCSVLQVVNE 42
GPG +GI CL + + + L S+GG C VLQ +E
Sbjct: 40 GPGNSGITCLIATIRHL-------LGFFSQGGRCKVLQFADE 74
>NCU06862.1 NCU06862.1 predicted protein (16576 - 14426)
Length = 686
Score = 26.9 bits (58), Expect = 0.60
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 52 TCRTEHTPPRDICGKQFKLIKKIEPSTLERQQIPAKPGP 168
T R++ PP + KLIK +EP ER +P+ P P
Sbjct: 263 TSRSKAPPPPPPSSRHGKLIK-VEPKGEERSGMPSTPRP 300
>NCU02052.1 NCU02052.1 hypothetical protein (3192 - 8804)
Length = 1870
Score = 24.6 bits (52), Expect = 3.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 70 TPPRDICGKQFKLIKKIEPSTLERQQIPAKPGPRP 174
TPP+ C +FK + P + + I A P P P
Sbjct: 1220 TPPKKRCVVKFKSEYRTLPKSKDMVAIEAPPPPAP 1254
>NCU00420.1 NCU00420.1 predicted protein (1957 - 3663)
Length = 522
Score = 24.6 bits (52), Expect = 3.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 34 KIISFTTCRTEHTPP---RDICGKQFKLIKKIEPSTLERQQIPAKPGPRP 174
+ + T + +PP R G ++I K EP + + QQ P P P P
Sbjct: 68 RAVGATPAAHKSSPPSASRSAGGSAPRIIVKKEPGSPDVQQQPPPPPPPP 117
>NCU02527.1 NCU02527.1 predicted protein (91084 - 88184)
Length = 730
Score = 24.3 bits (51), Expect = 3.9
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = +1
Query: 43 SFTTCRTEHTPPRDICGKQFKLIKKIEPSTLERQQIPAKPG 165
S +T + +HTP K+ + +K ST+ER I + G
Sbjct: 238 SDSTIKAQHTPHHQKASKESQEPEKKSVSTIERCSIAPQGG 278
>NCU00625.1 NCU00625.1 hypothetical protein (153946 - 167238)
Length = 3409
Score = 23.9 bits (50), Expect = 5.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 22 CKVSKIISFTTCRTEHT 72
C+V ++ISF C T++T
Sbjct: 1149 CRVIELISFVPCATDNT 1165
>NCU06799.1 NCU06799.1 hypothetical protein ( hypothetical protein
B14D6.340 [imported] - Ne
Length = 1176
Score = 23.1 bits (48), Expect = 8.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 124 PSTLERQQIPAKPGPRPR 177
PS RQ P +PGP P+
Sbjct: 984 PSARGRQMPPIQPGPSPQ 1001
>NCU07840.1 NCU07840.1 hypothetical protein (7219 - 4580)
Length = 879
Score = 23.1 bits (48), Expect = 8.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 40 ISFTTCRTEHTPPRDICGKQFKLIKKI 120
IS T C + + P D C + F+ KI
Sbjct: 732 ISLTLCPSSQSSPADWCEEDFRRWHKI 758
>NCU01394.1 NCU01394.1 predicted protein (10941 - 6982)
Length = 1266
Score = 23.1 bits (48), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = -2
Query: 83 SRGGVCSVLQVVNEMILLTLQVPA 12
S G SV + EM+LLT+ VP+
Sbjct: 566 SIAGASSVAETEIEMLLLTVDVPS 589
>NCU00348.1 NCU00348.1 hypothetical protein (470655 - 470052)
Length = 112
Score = 23.1 bits (48), Expect = 8.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 34 KIISFTTCRTEHTPPRDICGK 96
KII+ + RT+ P +CGK
Sbjct: 87 KIINLGSSRTDRCPGMGLCGK 107
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1147503
Number of Sequences: 6531
Number of extensions: 18059
Number of successful extensions: 45
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 59
length of database: 3,158,374
effective HSP length: 34
effective length of query: 24
effective length of database: 2,936,320
effective search space: 70471680
effective search space used: 70471680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)