BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_D07_T7.seq
(664 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU06376.1 NCU06376.1 predicted protein (137542 - 135719) 28 1.5
NCU01304.1 NCU01304.1 hypothetical protein ( (AL451021) related ... 26 7.4
NCU07348.1 NCU07348.1 predicted protein (14650 - 17829) 26 7.4
NCU09295.1 NCU09295.1 predicted protein (4615 - 5676) 26 9.6
NCU09993.1 NCU09993.1 hypothetical protein (33553 - 28016) 26 9.6
>NCU06376.1 NCU06376.1 predicted protein (137542 - 135719)
Length = 564
Score = 28.5 bits (62), Expect = 1.5
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +1
Query: 160 ISLIDPKSISQHFCDIVCKNVLGYLMPFRSLSIELIECILRPLVRPGAPPVREDKSTASK 339
+S++ P + QH C ++ + GY S S E R L+ P +PP S+
Sbjct: 300 LSVVHPTTWQQHPCSLIERRDSGYASDRSSSSAS--ETETRQLIPPSSPPPPPTTSSMPS 357
Query: 340 LAAPFTTSPVSDCKKTSDS 396
+ F+++ + +S S
Sbjct: 358 SRSSFSSTKKARPSSSSSS 376
>NCU01304.1 NCU01304.1 hypothetical protein ( (AL451021) related to
PET127 [Neurospora crass
Length = 1151
Score = 26.2 bits (56), Expect = 7.4
Identities = 27/113 (23%), Positives = 45/113 (38%), Gaps = 1/113 (0%)
Frame = -3
Query: 644 VRXRARGTETEEQIQKRLRNARAELDQSNSPGLFDHLL-VNDNLEACYENLKKMLSLDDD 468
V A TEE + ++ N +A + P L D +L + ++A + K + DD
Sbjct: 803 VEESASAVSTEEATEVKIENGQAA-EAEEEPTLKDLVLRLASQVKADRSEVVKGKAEDD- 860
Query: 467 HKDSDGCFIEDGKATACYSILSKTESEVFLQSETGEVVKGXXXXXXXXXXXLT 309
+D K +ILS+ S+ +ETGE+ +G T
Sbjct: 861 ---VSAAAADDSKLRKFETILSELISKSRDTTETGEITEGGEQTTASTDASAT 910
>NCU07348.1 NCU07348.1 predicted protein (14650 - 17829)
Length = 575
Score = 26.2 bits (56), Expect = 7.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 374 TAKKLLTLFWTG*NNMRLLSHPR*NNHLNL 463
T K+L TL W G +R + +PR N+ N+
Sbjct: 340 TLKRLGTLLWMGEEQIRSIRNPRSPNYHNV 369
>NCU09295.1 NCU09295.1 predicted protein (4615 - 5676)
Length = 332
Score = 25.8 bits (55), Expect = 9.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 149 EAVISH*LIQNPSVNTSATSFVRMFWVI*CPSD 247
+A+++ +Q P V TS +R WV+ CP++
Sbjct: 142 DALVTLRHLQTPYVQTSGYVNLRCVWVLGCPAE 174
>NCU09993.1 NCU09993.1 hypothetical protein (33553 - 28016)
Length = 1845
Score = 25.8 bits (55), Expect = 9.6
Identities = 11/38 (28%), Positives = 16/38 (41%)
Frame = +2
Query: 446 NNHLNLCGHHPTKASSSNSHSMLQGYHLPKDDQKDLVN 559
N + GHH + +NS S +H+P D N
Sbjct: 45 NTNGTTTGHHDNNETDNNSKSYSSTHHVPAIDNTSTTN 82
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3807313
Number of Sequences: 6531
Number of extensions: 74407
Number of successful extensions: 270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of query: 221
length of database: 3,158,374
effective HSP length: 44
effective length of query: 176
effective length of database: 2,871,010
effective search space: 505297760
effective search space used: 505297760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)