BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_D08_T7.seq
(270 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01921.1 NCU01921.1 hypothetical protein (213275 - 219513) 28 0.56
NCU09168.1 NCU09168.1 predicted protein (48822 - 50872) 27 1.6
NCU02320.1 NCU02320.1 predicted protein (35146 - 37504) 25 3.6
NCU00309.1 NCU00309.1 hypothetical protein (320988 - 319211) 25 4.7
NCU07706.1 NCU07706.1 predicted protein (67177 - 70579) 25 6.2
NCU09670.1 NCU09670.1 hypothetical protein (16221 - 22437) 24 8.1
>NCU01921.1 NCU01921.1 hypothetical protein (213275 - 219513)
Length = 1253
Score = 28.1 bits (61), Expect = 0.56
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 14 RGTLPWQFRGNAENKPFQAYTRIRIIDYIYE 106
+G LPWQ G E+KP + + + I E
Sbjct: 1082 KGPLPWQRHGECESKPVPCDAEVEVTEDIRE 1112
>NCU09168.1 NCU09168.1 predicted protein (48822 - 50872)
Length = 616
Score = 26.6 bits (57), Expect = 1.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +2
Query: 122 QQSFHKSMAMSYLSS----PDAPTAGYPVDEAASSDKD 223
++ F + +YLSS PDA T GY + EAA D
Sbjct: 251 KKMFFRMFLEAYLSSLQKNPDALTLGYTIKEAAPDPTD 288
>NCU02320.1 NCU02320.1 predicted protein (35146 - 37504)
Length = 738
Score = 25.4 bits (54), Expect = 3.6
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = +3
Query: 183 QVIRLTRQRPQTRTWAAASLAI 248
QV+ + RQR Q+ WA A+L +
Sbjct: 621 QVLEIGRQRAQSTIWARANLPV 642
>NCU00309.1 NCU00309.1 hypothetical protein (320988 - 319211)
Length = 573
Score = 25.0 bits (53), Expect = 4.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 28 MAVQGKCREQAISGLHAHTHHRLHI*N 108
+++ K E + +HA +HHR HI N
Sbjct: 532 LSIYSKGGEVSARDVHAESHHRRHIHN 558
>NCU07706.1 NCU07706.1 predicted protein (67177 - 70579)
Length = 909
Score = 24.6 bits (52), Expect = 6.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 122 QQSFHKSMAMSYLSSPDAPTAGYPVDEAASSDKDLG 229
+ S H S+ L +P P YP D A +LG
Sbjct: 644 RMSRHASLEKERLRAPSLPRHAYPSDRWADVPPELG 679
>NCU09670.1 NCU09670.1 hypothetical protein (16221 - 22437)
Length = 1906
Score = 24.3 bits (51), Expect = 8.1
Identities = 16/51 (31%), Positives = 23/51 (44%)
Frame = +3
Query: 33 SSGEMQRTSHFRLTRAYAS*TTYMKRPLLGSRVSTSPWLCLIYLHQMHQQQ 185
+ G + FRLTRA S +++ R G + L L Q+ QQQ
Sbjct: 953 NEGNVAEVKKFRLTRALQSVGSWLWRSAAGDNNNPMSELGLEVSQQLLQQQ 1003
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1719972
Number of Sequences: 6531
Number of extensions: 31593
Number of successful extensions: 79
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of query: 90
length of database: 3,158,374
effective HSP length: 39
effective length of query: 50
effective length of database: 2,903,665
effective search space: 145183250
effective search space used: 145183250
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)