BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_D11_T7.seq
(172 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU06551.1 NCU06551.1 predicted protein (50813 - 49689) 25 2.3
NCU06504.1 NCU06504.1 predicted protein (119836 - 120846) 24 3.9
NCU08861.1 NCU08861.1 hypothetical protein (82523 - 83964) 24 5.1
NCU10002.1 NCU10002.1 predicted protein (14288 - 11127) 24 5.1
NCU09418.1 NCU09418.1 predicted protein (14020 - 12899) 23 6.7
NCU08685.1 NCU08685.1 hypothetical protein (62860 - 66995) 23 6.7
NCU06977.1 NCU06977.1 predicted protein (88581 - 89637) 23 6.7
>NCU06551.1 NCU06551.1 predicted protein (50813 - 49689)
Length = 374
Score = 25.0 bits (53), Expect = 2.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 135 LLVSFSTKENEFHSRH*NFCCSCGGSR*TN 46
++VS ++ + H R N CCS GG T+
Sbjct: 167 VIVSSLNRDPDGHYRRYNLCCSKGGKTYTS 196
>NCU06504.1 NCU06504.1 predicted protein (119836 - 120846)
Length = 315
Score = 24.3 bits (51), Expect = 3.9
Identities = 9/32 (28%), Positives = 16/32 (49%)
Frame = -3
Query: 164 PPGQVHIVRTYWSPSQPKKTNFTPDTETSVVL 69
P H++ ++WS PK + P E +V+
Sbjct: 191 PNSNGHLILSHWSNGNPKWSGGPPKEEAPLVI 222
>NCU08861.1 NCU08861.1 hypothetical protein (82523 - 83964)
Length = 447
Score = 23.9 bits (50), Expect = 5.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 116 PKKTNFTPDTETSVVLVVVLGKQ--TLLHSGHTKYLGRDH 3
PKK + V+ ++ KQ TL H G +GRDH
Sbjct: 78 PKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDH 117
>NCU10002.1 NCU10002.1 predicted protein (14288 - 11127)
Length = 1053
Score = 23.9 bits (50), Expect = 5.1
Identities = 10/26 (38%), Positives = 13/26 (49%)
Frame = -3
Query: 167 RPPGQVHIVRTYWSPSQPKKTNFTPD 90
RPPG H +PS+P T P+
Sbjct: 418 RPPGLQHQATAPANPSKPSSTTANPN 443
>NCU09418.1 NCU09418.1 predicted protein (14020 - 12899)
Length = 339
Score = 23.5 bits (49), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 108 FLWLRRRPVGTNDVYLPGRP 167
F L+RRP+ T D L G+P
Sbjct: 189 FFSLKRRPLETEDDSLSGKP 208
>NCU08685.1 NCU08685.1 hypothetical protein (62860 - 66995)
Length = 1357
Score = 23.5 bits (49), Expect = 6.7
Identities = 7/22 (31%), Positives = 13/22 (58%)
Frame = +2
Query: 20 IWCDQSVREFVYLEPPQEQQKF 85
IWC+++ +V L P ++F
Sbjct: 551 IWCNEAQERYVLLVNPDSMERF 572
>NCU06977.1 NCU06977.1 predicted protein (88581 - 89637)
Length = 289
Score = 23.5 bits (49), Expect = 6.7
Identities = 12/46 (26%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Frame = -3
Query: 161 PGQVHIVR-TYWSPSQPKKTNFTPDTETSVVLVVVLGKQTLLHSGH 27
P H++R T W + ++ FT + + + +VL L++ GH
Sbjct: 47 PHDGHLIRRTIWGQNYAHRSGFTQNATITSIYWLVLFILQLVYIGH 92
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1159047
Number of Sequences: 6531
Number of extensions: 17755
Number of successful extensions: 53
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of query: 57
length of database: 3,158,374
effective HSP length: 32
effective length of query: 24
effective length of database: 2,949,382
effective search space: 70785168
effective search space used: 70785168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)