BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_E01_T7.seq
(368 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU08901.1 NCU08901.1 predicted protein (77321 - 74505) 28 0.68
NCU01554.1 NCU01554.1 hypothetical protein ( (AL451012) related ... 28 0.89
NCU10026.1 NCU10026.1 hypothetical protein (20185 - 25233) 27 2.0
NCU09441.1 NCU09441.1 predicted protein (47511 - 44242) 27 2.0
NCU07863.1 NCU07863.1 hypothetical protein (79058 - 85856) 27 2.6
NCU09449.1 NCU09449.1 hypothetical protein (5874 - 2580) 27 2.6
NCU07784.1 NCU07784.1 hypothetical protein (50832 - 48439) 27 2.6
NCU07511.1 NCU07511.1 hypothetical protein (4497 - 6155) 27 2.6
NCU07060.1 NCU07060.1 hypothetical protein (17053 - 17763) 26 3.4
NCU00515.1 NCU00515.1 predicted protein (73021 - 70012) 26 4.4
NCU08961.1 NCU08961.1 hypothetical protein (4670 - 1527) 26 4.4
NCU00591.1 NCU00591.1 hypothetical protein (42259 - 44612) 25 5.8
NCU09500.1 NCU09500.1 hypothetical protein (9123 - 13235) 25 5.8
NCU01623.1 NCU01623.1 hypothetical protein ( neurofilament-H rel... 25 5.8
NCU02753.1 NCU02753.1 hypothetical protein (13323 - 12037) 25 7.5
NCU07841.1 NCU07841.1 predicted protein (9773 - 7855) 25 7.5
NCU00118.1 NCU00118.1 hypothetical protein (120247 - 122938) 25 7.5
NCU09604.1 NCU09604.1 predicted protein (11021 - 12945) 25 7.5
NCU06339.1 NCU06339.1 predicted protein (19631 - 21692) 25 7.5
NCU09352.1 NCU09352.1 hypothetical protein (54192 - 56130) 25 7.5
NCU01597.1 NCU01597.1 hypothetical protein (32055 - 23542) 25 9.8
NCU06754.1 NCU06754.1 hypothetical protein (58714 - 55970) 25 9.8
NCU07985.1 NCU07985.1 hypothetical protein (40437 - 38542) 25 9.8
NCU01100.1 NCU01100.1 hypothetical protein (296630 - 295203) 25 9.8
NCU06534.1 NCU06534.1 hypothetical protein (7074 - 2213) 25 9.8
>NCU08901.1 NCU08901.1 predicted protein (77321 - 74505)
Length = 938
Score = 28.5 bits (62), Expect = 0.68
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Frame = -2
Query: 340 HEGAPSASLAVHTRLTHDAERGAPSRRITSVVVVTPLRA-SDSDLCKPPSTWHTPQQ--- 173
H+ A + A T+ T + P + S+ VV P + S+ C S+W TP++
Sbjct: 69 HQHAAPSPRANQTKATKSPSKSPP--QTPSIEVVPPFHTYTPSESCSTSSSWETPERMLS 126
Query: 172 --PAQSLYQAMPNSWPPGEATR 113
A S + P+ P + R
Sbjct: 127 IDRALSPFSRQPSPLPSPRSPR 148
>NCU01554.1 NCU01554.1 hypothetical protein ( (AL451012) related to
c-module-binding factor
Length = 1458
Score = 28.1 bits (61), Expect = 0.89
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 363 RPPGQVQPTKGHHQPAWLSTQDSHTTPREEHRRG 262
RPPG+ + ++ HH ++SH P RRG
Sbjct: 1060 RPPGRPRKSEAHH----TEDEESHEAPEPTRRRG 1089
>NCU10026.1 NCU10026.1 hypothetical protein (20185 - 25233)
Length = 1598
Score = 26.9 bits (58), Expect = 2.0
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Frame = -1
Query: 368 SSGRPGRYNP-RRGTISQPGCPHKTHTRRRERSTVEADYKCGRRHSSASQRLRLVQTP-- 198
SS +P +P RR + HK HT R ++ E + + S+ S+R V T
Sbjct: 430 SSSKPQAVSPIRRRAAASAARLHKQHTSRDPKTAYEQNSRPHLEGSNVSRRRAAVSTTAR 489
Query: 197 ---IDVAHTATTRTKSVSSYAKQLATGRSDEITLTLKRV 90
ID+ T + S ++ S E T L V
Sbjct: 490 SDIIDITSTPGSEIIRSSPANNNMSVKISQEFTKDLAGV 528
>NCU09441.1 NCU09441.1 predicted protein (47511 - 44242)
Length = 1068
Score = 26.9 bits (58), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 366 ERPPGQVQPTKGHHQPAWLSTQDSHTTPREE 274
+RP GQ Q + H P LST S+ P ++
Sbjct: 945 QRPQGQPQRQQPHFHPKGLSTSASNLPPSQQ 975
>NCU07863.1 NCU07863.1 hypothetical protein (79058 - 85856)
Length = 2189
Score = 26.6 bits (57), Expect = 2.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 357 PGQVQPTKGHHQPAWLSTQDSHTTPREEHRRGGLQ 253
PGQVQP H ++Q + T + +H R Q
Sbjct: 1855 PGQVQPQHAQHSRHTPNSQHAQHTQQAQHARNAQQ 1889
>NCU09449.1 NCU09449.1 hypothetical protein (5874 - 2580)
Length = 1059
Score = 26.6 bits (57), Expect = 2.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 202 PPSTWHTPQQPAQSLYQAMPNS 137
PPS HTP P Q Y P S
Sbjct: 210 PPSAQHTPTSPVQRPYNQYPPS 231
>NCU07784.1 NCU07784.1 hypothetical protein (50832 - 48439)
Length = 797
Score = 26.6 bits (57), Expect = 2.6
Identities = 11/31 (35%), Positives = 14/31 (44%), Gaps = 5/31 (16%)
Frame = -3
Query: 342 PTKGHHQ-----PAWLSTQDSHTTPREEHRR 265
P+ HHQ P W+ T H P HR+
Sbjct: 181 PSSSHHQHRSYYPDWIPTAGLHPNPHHGHRQ 211
>NCU07511.1 NCU07511.1 hypothetical protein (4497 - 6155)
Length = 477
Score = 26.6 bits (57), Expect = 2.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 159 RLCAGCCGVCHVDGGLHKSESLARRGVTTTTLVIRLDGAPLS 284
R+C C C D G H S SL R T +V G L+
Sbjct: 411 RMCWHCAKGCARDDGRHVSTSLFERYNTWVEIVTHYSGRELT 452
>NCU07060.1 NCU07060.1 hypothetical protein (17053 - 17763)
Length = 211
Score = 26.2 bits (56), Expect = 3.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 297 SHTTPREEHRRGGLQVWSSSL---LCEPATPTCANPHRRGTHRNNPH 166
S T PR R+ + ++S L EP+T T + + H NNPH
Sbjct: 14 SSTAPRR--RKVDMSTFTSHLHNIAPEPSTSTSNSSQSQSQHHNNPH 58
>NCU00515.1 NCU00515.1 predicted protein (73021 - 70012)
Length = 841
Score = 25.8 bits (55), Expect = 4.4
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 7/71 (9%)
Frame = -3
Query: 360 PPGQVQPTKGHHQPAWLSTQDSHTT----PREEHRRG---GLQVWSSSLLCEPATPTCAN 202
P GQV P GH W S SH T P + H G G + S +P P A
Sbjct: 307 PLGQVLPDPGH----WGSRHTSHATSVNNPNQHHTNGPPLGHRRQPSHQSSQPVLPATAT 362
Query: 201 PHRRGTHRNNP 169
G+H P
Sbjct: 363 -SSAGSHIRLP 372
>NCU08961.1 NCU08961.1 hypothetical protein (4670 - 1527)
Length = 1018
Score = 25.8 bits (55), Expect = 4.4
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Frame = -3
Query: 363 RPPGQVQPTKGHHQPAWLSTQDSHTTPREEHRRGG-LQVWSSSLLCEPATPTCANP--HR 193
RPP + +P + Q + + + P+ GG +Q S SL +P+T T P +
Sbjct: 395 RPPAKGKPGEASQQSMTVEAETVTSIPQVALAPGGGVQPSSLSLRTKPSTETIRPPKKEK 454
Query: 192 RGTHRNNPH 166
+ T R P+
Sbjct: 455 KRTARKQPN 463
>NCU00591.1 NCU00591.1 hypothetical protein (42259 - 44612)
Length = 743
Score = 25.4 bits (54), Expect = 5.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 204 LHKSESLARRGVTTTTLVIRLDGAPLSASCVSLVWTARLADGAPS 338
L + + A G+ TTTL +D A A C L+ GAPS
Sbjct: 66 LRVARTAASMGIRTTTLYTDIDAASQHAKCTPYA----LSLGAPS 106
>NCU09500.1 NCU09500.1 hypothetical protein (9123 - 13235)
Length = 1353
Score = 25.4 bits (54), Expect = 5.8
Identities = 16/70 (22%), Positives = 28/70 (39%)
Frame = -1
Query: 350 RYNPRRGTISQPGCPHKTHTRRRERSTVEADYKCGRRHSSASQRLRLVQTPIDVAHTATT 171
R NP+ GTI P P + T T++ + R S+ + + + A T T
Sbjct: 205 RLNPKTGTIGSPPKPKQPETTEETAPTIKRRVQPSRVKKPESKVVTIKYSSESDAETRTR 264
Query: 170 RTKSVSSYAK 141
+ + + K
Sbjct: 265 VGEKIEAILK 274
>NCU01623.1 NCU01623.1 hypothetical protein ( neurofilament-H
related protein [imported] - N
Length = 837
Score = 25.4 bits (54), Expect = 5.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 339 TKGHHQPAWLSTQDSHTT 286
T+GHHQPA S Q S T
Sbjct: 82 TQGHHQPASKSDQSSSIT 99
>NCU02753.1 NCU02753.1 hypothetical protein (13323 - 12037)
Length = 378
Score = 25.0 bits (53), Expect = 7.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 185 HTATTRTKSVSSYAKQLATGRSDEI 111
HTA+ T +S K LATG +D I
Sbjct: 242 HTASCLTAELSPTGKYLATGGADSI 266
>NCU07841.1 NCU07841.1 predicted protein (9773 - 7855)
Length = 577
Score = 25.0 bits (53), Expect = 7.5
Identities = 18/68 (26%), Positives = 26/68 (37%)
Frame = -3
Query: 357 PGQVQPTKGHHQPAWLSTQDSHTTPREEHRRGGLQVWSSSLLCEPATPTCANPHRRGTHR 178
P ++ + H AWLSTQ + + G SS TP P+R
Sbjct: 272 PMPIERSGQHSANAWLSTQSNEALDIADQYLGMAAHDGSSDAGNVITPVL--PYRLSPPG 329
Query: 177 NNPHKVCI 154
+PH C+
Sbjct: 330 THPHSQCM 337
>NCU00118.1 NCU00118.1 hypothetical protein (120247 - 122938)
Length = 651
Score = 25.0 bits (53), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (69%)
Frame = -3
Query: 264 GGLQVWSSSLLCEPATP 214
GGL V SSS+ PATP
Sbjct: 434 GGLSVMSSSIYTPPATP 450
>NCU09604.1 NCU09604.1 predicted protein (11021 - 12945)
Length = 256
Score = 25.0 bits (53), Expect = 7.5
Identities = 10/29 (34%), Positives = 14/29 (47%)
Frame = -3
Query: 153 KLCQTVGHREKRRDNSDFEEGRMQKIYAR 67
K +KRRDN F G+ ++Y R
Sbjct: 205 KAAAAASKHKKRRDNKRFRFGQFNRLYRR 233
>NCU06339.1 NCU06339.1 predicted protein (19631 - 21692)
Length = 667
Score = 25.0 bits (53), Expect = 7.5
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = -2
Query: 364 AAARAGTTHEGAPSASLAVHTRLTHDAERGAPSRRITSVVVVTPLR 227
AAA + T +PS+SL+ + ++ G PS +++VV T LR
Sbjct: 513 AAAYSSTKRPESPSSSLS--SPVSPPPTSGQPSPTLSAVVTATNLR 556
>NCU09352.1 NCU09352.1 hypothetical protein (54192 - 56130)
Length = 579
Score = 25.0 bits (53), Expect = 7.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Frame = -2
Query: 202 PPSTW-HTPQQP-----AQSLYQAMPNSWPPGEAT 116
PP+ + H PQQP Q YQ P +PP A+
Sbjct: 43 PPAAYAHPPQQPPAYPLQQPPYQQAPGYYPPPAAS 77
>NCU01597.1 NCU01597.1 hypothetical protein (32055 - 23542)
Length = 2837
Score = 24.6 bits (52), Expect = 9.8
Identities = 19/55 (34%), Positives = 25/55 (44%)
Frame = -1
Query: 272 TVEADYKCGRRHSSASQRLRLVQTPIDVAHTATTRTKSVSSYAKQLATGRSDEIT 108
TVEA+ SS S+RL TP + RT SV+ + + DEIT
Sbjct: 92 TVEAESSRVTSRSSVSRRLFQHSTPTARSIRERERTTSVTVPLRGVEDDDDDEIT 146
>NCU06754.1 NCU06754.1 hypothetical protein (58714 - 55970)
Length = 888
Score = 24.6 bits (52), Expect = 9.8
Identities = 19/75 (25%), Positives = 30/75 (39%), Gaps = 9/75 (12%)
Frame = -2
Query: 199 PSTWHTPQQPAQSLYQAMPNSWPPGE---------ATR*L*L*RGSNAEDICKARADEDL 47
PST + P P+ S Y P+S+ P A+ + G + A+ L
Sbjct: 698 PSTSNLPTTPSPSTYFPRPSSFAPSSPAATAAAVLASAAALVGFGGYSASAPSGAANNTL 757
Query: 46 VQDHQTPVITSAATT 2
+ D P +T+ TT
Sbjct: 758 ISDRAIPGMTTTRTT 772
>NCU07985.1 NCU07985.1 hypothetical protein (40437 - 38542)
Length = 545
Score = 24.6 bits (52), Expect = 9.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 188 PRRWGFAQVGVAGSQRSDDDHTCNPPRRCSSL--GVVCESCVD 310
PRR + AG+ + D D T + R SSL V ES VD
Sbjct: 261 PRRSNDVEAASAGTAQEDIDETSSLVSRSSSLPGDVYVESSVD 303
>NCU01100.1 NCU01100.1 hypothetical protein (296630 - 295203)
Length = 433
Score = 24.6 bits (52), Expect = 9.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 360 PPGQVQPTKGHHQPAWLSTQDSHTTPREEHRRGGLQVWSS 241
PP + P +PA Q S + P++ +R GL SS
Sbjct: 65 PPEYIGPRTLDGRPAPQYAQSSSSAPKKTQKRTGLATLSS 104
>NCU06534.1 NCU06534.1 hypothetical protein (7074 - 2213)
Length = 1600
Score = 24.6 bits (52), Expect = 9.8
Identities = 11/36 (30%), Positives = 17/36 (46%)
Frame = -3
Query: 342 PTKGHHQPAWLSTQDSHTTPREEHRRGGLQVWSSSL 235
P + PA+L + + T REE R+ W+ L
Sbjct: 341 PDYAANAPAFLKSMRTAITSREERRQNAASAWACYL 376
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2599450
Number of Sequences: 6531
Number of extensions: 63828
Number of successful extensions: 304
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of query: 122
length of database: 3,158,374
effective HSP length: 42
effective length of query: 80
effective length of database: 2,884,072
effective search space: 230725760
effective search space used: 230725760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)